View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_5 (Length: 555)
Name: NF11603_low_5
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 34093171 - 34093675
Alignment:
| Q |
18 |
cttatatcaaatctcagtagcactgagagtagccgaaaaggtaaccatgcatagttttaggtgcagagtgcaattctgatatgtgtatgtatgtcaatgt |
117 |
Q |
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| T |
34093171 |
cttatatcaaatctcagtagcactgcgagtagccgaaaaggtaaccatgcatagttttaggtgcagagtgcaattctgatatgtgtatgtatgtcaatgt |
34093270 |
T |
|
| Q |
118 |
gacatgacttctactttggcatattccaataccagaaaaattgattctactaaaattcatgagccacgagaaaatggaaaaaagacaataaccctatatt |
217 |
Q |
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| T |
34093271 |
gacatgacttctactttggcatattccaataccagaaaaattgattctactaaaattcatgagccacgagaaaatggaaaaaagacaataaccctatatt |
34093370 |
T |
|
| Q |
218 |
aagaaagtgctattaattaatataataatacttcattatggcaaacatgtc---actaccagtgctaacagataaccacaatggaagcagcagcattacc |
314 |
Q |
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| T |
34093371 |
aagaaagtgctattaattaatataataatacttcattatggcaaacatgtcactactaccagtgctaacagataaccacaatgga---agcagcattacc |
34093467 |
T |
|
| Q |
315 |
atcatgtcgacatgtaaaatcatagagtgaaaattttatcaaagatccttcaaatttttactaccatttattgcattaacatcatcacatcacatcacat |
414 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093468 |
atcatgtcgacaagtaaaatcatagagtgaaaattttatcaaagatccttcaaatttttactaccatttattgcattaacatcatcacatcacatc---- |
34093563 |
T |
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| Q |
415 |
cactagttaatttctagcaaggatttgttcagttagagcaggaagacttgaaaggcaagcataattagaagctcaagatccaagtgaggtgcaggctaat |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093564 |
---------------agcaaggatttgttcagttagagcaggaagacttgaaaggcaagcataattagaagctcaagatccaagtgaggtgcaggctaat |
34093648 |
T |
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| Q |
515 |
atcattacctttttctggttatctctg |
541 |
Q |
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| T |
34093649 |
atcattacctttttctggttatctctg |
34093675 |
T |
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