View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11603_low_6 (Length: 517)

Name: NF11603_low_6
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11603_low_6
NF11603_low_6
[»] chr5 (7 HSPs)
chr5 (20-506)||(29711578-29712074)
chr5 (42-295)||(29696686-29696940)
chr5 (27-295)||(29688564-29688827)
chr5 (332-383)||(29688941-29688992)
chr5 (465-506)||(29697220-29697261)
chr5 (248-293)||(9120420-9120465)
chr5 (298-334)||(29688846-29688882)
[»] chr3 (1 HSPs)
chr3 (59-208)||(47451345-47451494)
[»] chr8 (2 HSPs)
chr8 (59-141)||(4030300-4030382)
chr8 (332-380)||(4029986-4030034)
[»] chr4 (9 HSPs)
chr4 (332-385)||(48734629-48734682)
chr4 (61-149)||(48903421-48903509)
chr4 (230-293)||(48871196-48871259)
chr4 (230-293)||(48876500-48876563)
chr4 (230-293)||(48886882-48886945)
chr4 (331-384)||(48871410-48871463)
chr4 (331-384)||(48876714-48876767)
chr4 (338-375)||(49058043-49058080)
chr4 (234-287)||(50669722-50669775)
[»] chr7 (1 HSPs)
chr7 (108-146)||(30124824-30124862)
[»] chr1 (1 HSPs)
chr1 (332-384)||(24381873-24381925)


Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Complemental strand, 29712074 - 29711578
Alignment:
Q  20 tgatggaattcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgac 119  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29712074 tgatggaattcccagccattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgag 29711975  T
Q  120 aaaggacaactgctagagcatcactcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgaca 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29711974 aaaggacaactgctagagcatcagtcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctttcaattcctgatggtgaca 29711875  T
Q  220 gtggtcaagctaagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgatctacatgtactcttgggtggctgcat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29711874 gtggtcaagctaagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgatctacatgtactcttgggtggctgcat 29711775  T
Q  320 tcgtaggttaatatgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgacagcnnnnnnnngtgtgaatcactg----tagttagt 415  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||        |||||||||||||    ||||||||    
T  29711774 tcgtaggttaatatggagtgtttattggttaaacatttgtaatatgcttattgaaaatgttgacagcttttttttgtgtgaatcactgtatatagttagt 29711675  T
Q  416 gtatatttgtggtcactggttgtaattgttttatattttcattgatt------gtttatgcatgttgatcaagatcaaaatcccattctcatttcat 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  29711674 gtatatttgtggtcactggttgtaattgttttatattttcattgatttgatgagtttatgcatgttgatcaagatcaaaatcccattctcatttcat 29711578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 42 - 295
Target Start/End: Original strand, 29696686 - 29696940
Alignment:
Q  42 ttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc 141  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| |||     ||  || ||||||||||||||||||||||||||| |||| ||| ||||    
T  29696686 ttttggccgaaatactatacaaaaagtggtgatatcgttggaagaaacatgcgttgtgcattggccaagtataatgacaaaggacagctgcaagaacatc 29696785  T
Q  142 actcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaag-ctaagaagatga 240  Q
    ||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  |||||||||||    
T  29696786 actcctactgtgacagtcaatatgtatccccagtggttatgtatacagaatctctgctttcaattcctggtggtgacagtggtcaagtttaagaagatga 29696885  T
Q  241 aacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgatct 295  Q
     |  |  |||||||| ||||| |||||||||||| ||||||||||||| ||||||    
T  29696886 cagaaccaagaagaatgaggttttgaagtattcttcttcaccattttcatgatct 29696940  T

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Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 295
Target Start/End: Original strand, 29688564 - 29688827
Alignment:
Q  27 attcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggac 126  Q
    ||||||| ||| || ||||||||||||||   |||||||||||||||||||||||||||  | | |   ||||||||||||||||||||||| |||||||    
T  29688564 attcccattcactacttttgtccgaaatattgtacaaaaagtggtgatatcgttggaaccgacgat---aatgtattggccaagtataatgataaaggac 29688660  T
Q  127 aactgctagagcatcactcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgacagtggtca 226  Q
    | ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||    
T  29688661 agctgctagagcatcactcctactcggaccatgaatatggatccctagtggttatgtatacagaatctctgctttcacttcctggtggtgacagtgatca 29688760  T
Q  227 agc-taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgatct 295  Q
     || ||||||||||  ||| |  | ||||| ||||| || |||||||| |||||||||||||| ||||||    
T  29688761 ggcttaagaagatg--acgca-gacaagaatgaggttttcaagtattccccttcaccattttcatgatct 29688827  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 383
Target Start/End: Original strand, 29688941 - 29688992
Alignment:
Q  332 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgac 383  Q
    ||||| ||||||||||| ||||||||||| | ||||||||||||||||||||    
T  29688941 atgaaatgtttattggtcaaacatttgtattgtgtttattgaaaatgttgac 29688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 465 - 506
Target Start/End: Original strand, 29697220 - 29697261
Alignment:
Q  465 ttatgcatgttgatcaagatcaaaatcccattctcatttcat 506  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  29697220 ttatgcatgttgatcaatatcaaaatctcattctcatttcat 29697261  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 9120420 - 9120465
Alignment:
Q  248 aagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 293  Q
    |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  9120420 aagaagaatgaggttttgaaatattctccttcaccattttcttgat 9120465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 29688846 - 29688882
Alignment:
Q  298 atgtactcttgggtggctgcattcgtaggttaatatg 334  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  29688846 atgtactcttgagtggctgcattcgtagggtaatatg 29688882  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 208
Target Start/End: Complemental strand, 47451494 - 47451345
Alignment:
Q  59 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaat 158  Q
    ||||||||||||||||||  |||||||| ||| || ||  | |||||  ||||||||||||||||||||  || |||||||||  ||||| ||| || ||    
T  47451494 tacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatcgttcctattgtaacgat 47451395  T
Q  159 gaatatggatccctagtggttatgtatacagaatctctgctctcaattcc 208  Q
      || ||||| || |||||||||||| ||||| |||||||| ||| ||||    
T  47451394 ccatgtggatgccaagtggttatgtacacagagtctctgctttcacttcc 47451345  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 4030382 - 4030300
Alignment:
Q  59 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc 141  Q
    ||||| ||||||||||||  |||||||| ||| ||||| || |||||  |||||| |||||||||||||  ||||||||||||    
T  4030382 tacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagcatc 4030300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 4030034 - 4029986
Alignment:
Q  332 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgtt 380  Q
    ||||| || |||||| |||| |||||| |||||||||||||||||||||    
T  4030034 atgaaatggttattgattaatcatttggaatatgtttattgaaaatgtt 4029986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 48734682 - 48734629
Alignment:
Q  332 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgacag 385  Q
    ||||| |||||||| || ||||||||||||||||||||| |||| |||||||||    
T  48734682 atgaaatgtttattagtcaaacatttgtaatatgtttatcgaaattgttgacag 48734629  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 48903421 - 48903509
Alignment:
Q  61 caaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctac 149  Q
    |||||| |||||| ||| |||||||||| | ||||| |  |||||  ||||||||||||||||||||  | |||||| |||||||||||    
T  48903421 caaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagtatcactcctac 48903509  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 48871196 - 48871259
Alignment:
Q  230 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 293  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48871196 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48871259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 48876500 - 48876563
Alignment:
Q  230 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 293  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48876500 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48876563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 48886882 - 48886945
Alignment:
Q  230 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 293  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48886882 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48886945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 48871410 - 48871463
Alignment:
Q  331 tatgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgaca 384  Q
    |||||| ||||||||| |||   |||| ||||||||||||||||||||||||||    
T  48871410 tatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgaca 48871463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 48876714 - 48876767
Alignment:
Q  331 tatgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgaca 384  Q
    |||||| ||||||||| |||   |||| ||||||||||||||||||||||||||    
T  48876714 tatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgaca 48876767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 49058080 - 49058043
Alignment:
Q  338 tgtttattggttaaacatttgtaatatgtttattgaaa 375  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  49058080 tgtttattggtcaaacacttgtaatatgtttattgaaa 49058043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 50669722 - 50669775
Alignment:
Q  234 aagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccatttt 287  Q
    ||||||| || || ||||||||| |||| ||||| |||||||||||||||||||    
T  50669722 aagatgacacaaacaagaagaacaaggttttgaaatattctccttcaccatttt 50669775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 30124862 - 30124824
Alignment:
Q  108 aagtataatgacaaaggacaactgctagagcatcactcc 146  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  30124862 aagtttaatgacaaaggacagctgctagagcatcactcc 30124824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 24381873 - 24381925
Alignment:
Q  332 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgaca 384  Q
    ||||| ||||||||||||||  |||||||| |||||||||| |||| ||||||    
T  24381873 atgaaatgtttattggttaactatttgtaacatgtttattggaaatattgaca 24381925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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