View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11604_high_1 (Length: 603)

Name: NF11604_high_1
Description: NF11604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11604_high_1
NF11604_high_1
[»] chr7 (2 HSPs)
chr7 (193-586)||(2792912-2793312)
chr7 (1-110)||(2793395-2793504)
[»] chr5 (1 HSPs)
chr5 (326-412)||(9121221-9121307)
[»] chr2 (4 HSPs)
chr2 (360-428)||(43920779-43920848)
chr2 (361-440)||(1648024-1648103)
chr2 (361-440)||(11992923-11993002)
chr2 (361-440)||(37520607-37520686)
[»] chr1 (6 HSPs)
chr1 (361-440)||(52920995-52921074)
chr1 (367-407)||(1651627-1651667)
chr1 (361-438)||(4001864-4001941)
chr1 (363-440)||(9599924-9600001)
chr1 (361-442)||(51850775-51850856)
chr1 (361-429)||(32079332-32079400)
[»] chr6 (1 HSPs)
chr6 (326-440)||(20430534-20430648)
[»] scaffold0279 (1 HSPs)
scaffold0279 (361-440)||(18399-18478)
[»] chr3 (2 HSPs)
chr3 (361-440)||(51450766-51450845)
chr3 (533-578)||(20685682-20685727)
[»] chr4 (1 HSPs)
chr4 (2-67)||(48668020-48668085)
[»] chr8 (2 HSPs)
chr8 (528-564)||(30191073-30191109)
chr8 (337-393)||(40368695-40368751)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 193 - 586
Target Start/End: Complemental strand, 2793312 - 2792912
Alignment:
Q  193 taaaagcacttatgtataactagttatttcatataatctatatgttgtttt----attacaacaacaacaaca---atcgaacgacaccatagtgttcta 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||   ||||||||||||||||||||||||    
T  2793312 taaaagcacttatgtataactagttatttcatataatctatatgttgttttcattataacaacaacaacaacataaatcgaacgacaccatagtgttcta 2793213  T
Q  286 tataaaactgcttgagctatacattgagtgtcgtccaagaaacgacctaatcttcacactaatgcgtattctattcatgtcatagatattggacaaagtt 385  Q
    || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2793212 taaaaaactgcttgagctatacaatgagtgtcgtccaagaaacaacctaatcttcacactattgcgtattctattcatgtcatagatattggacaaagtt 2793113  T
Q  386 ttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggactgacaatggaaaacaaacctaaacataggcggaatttgttttcat 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  2793112 ttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttggggccgacaatggaaaacaaacctaaacataggcggaatttgttttcat 2793013  T
Q  486 tataagctattctaaaaaagcacatgaacataaactttctcactaagaagtgcgtatgccaatagataaactcaaataaatcaaactaaacaagcataaa 585  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2793012 tataagctattctaaaaaaggatatgaacataaactttctcactaagaagtgtgtatgccaatagataaactcaaataaatcaaactaaacaagcataaa 2792913  T
Q  586 t 586  Q
    |    
T  2792912 t 2792912  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2793504 - 2793395
Alignment:
Q  1 ggcaagaaatggattggtgattttatataggaatacaggaagagcctgcaaattggaagtatgaaagaaacaggtgtcaaacagttttttcggtttagga 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||| ||||| ||||||||||||||||||||||    
T  2793504 ggcaagaaatggattggtgattttatataggaatataggaagagcctgcagattggaagtttgaaagcaacgggtgttaaacagttttttcggtttagga 2793405  T
Q  101 atcgatataa 110  Q
    ||||||||||    
T  2793404 atcgatataa 2793395  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 412
Target Start/End: Original strand, 9121221 - 9121307
Alignment:
Q  326 aacgacctaatcttcacactaatgcgtattctattcatgtcatagatattggacaaagttttatgtttgctgcccaagcttaacata 412  Q
    |||||||||  ||| |||||| ||||||||  |||||| ||| | | |||||||||||||||||||||| |||||||||||||||||    
T  9121221 aacgacctagccttaacactattgcgtatttgattcatatcaaaaagattggacaaagttttatgtttgttgcccaagcttaacata 9121307  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 43920779 - 43920848
Alignment:
Q  360 tcatgtcatagatattggacaaagttttatg-tttgctgcccaagcttaacataaccgtctccttttacc 428  Q
    |||||||||||| |||||||||||||||| | |||||||| |||| |||||| |||| ||||||||||||    
T  43920779 tcatgtcatagagattggacaaagttttacgttttgctgctcaagtttaacacaaccctctccttttacc 43920848  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 1648103 - 1648024
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 440  Q
    ||||||||||| ||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||  |||||||||    
T  1648103 catgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 1648024  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 11993002 - 11992923
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 440  Q
    ||||||||||| ||| |||||||||||||||| |||| | | || ||||| |||| ||| |||||||||  |||||||||    
T  11993002 catgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttacccgggcttgggac 11992923  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 37520686 - 37520607
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 440  Q
    ||||||||||| ||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||  |||||||||    
T  37520686 catgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 37520607  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 52921074 - 52920995
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 440  Q
    ||||||||||| ||| |||||||||||||||| |||| | | || ||||| |||| |||||||||||||  |||||||||    
T  52921074 catgtcatagagattcgacaaagttttatgttggctgtcaaggcctaacacaaccctctccttttacccgggcttgggac 52920995  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 1651627 - 1651667
Alignment:
Q  367 atagatattggacaaagttttatgtttgctgcccaagctta 407  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  1651627 atagagatcggacaaagttttatgtttgctgcccaagctta 1651667  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 438
Target Start/End: Complemental strand, 4001941 - 4001864
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttggg 438  Q
    ||||||||||| ||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||  |||||||    
T  4001941 catgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttggg 4001864  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 9600001 - 9599924
Alignment:
Q  363 tgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 440  Q
    ||||||||| ||  |||||||||||| ||| |||| | | || ||||| |||| ||||||||||||| ||||||||||    
T  9600001 tgtcatagagatccgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgagcttgggac 9599924  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 442
Target Start/End: Complemental strand, 51850856 - 51850775
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggactg 442  Q
    ||||||||||| ||| ||| |||||||||||| | || | | || ||||| |||| |||||||||||||  |||||||||||    
T  51850856 catgtcatagagattcgacgaagttttatgttggatgtcgaggcctaacacaaccctctccttttacccaggcttgggactg 51850775  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 32079400 - 32079332
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccc 429  Q
    ||||||||||| ||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||    
T  32079400 catgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttaccc 32079332  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 20430534 - 20430648
Alignment:
Q  326 aacgacctaatcttcacactaatgcgtattctattcatgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctcctttt 425  Q
    ||||||||||  ||||||||| |  |||||   ||||||||||||| |||  ||||||||||| ||| |||| | | || ||||| |||| |||||||||    
T  20430534 aacgacctaaaattcacactattttgtatttggttcatgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 20430633  T
Q  426 accctagcttgggac 440  Q
    |||| ||||||||||    
T  20430634 acccgagcttgggac 20430648  T

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Target: scaffold0279 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 18478 - 18399
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 440  Q
    ||||||||||| ||| |||||||||||| ||| | || | | |||||||| |||| |||||||||||||  |||||||||    
T  18478 catgtcatagagattcgacaaagttttacgttggttgtcgaggcttaacacaaccttctccttttacccgggcttgggac 18399  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 51450766 - 51450845
Alignment:
Q  361 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 440  Q
    |||| |||||||||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||  |||||||||    
T  51450766 catgccatagatattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 51450845  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 578
Target Start/End: Original strand, 20685682 - 20685727
Alignment:
Q  533 aagtgcgtatgccaatagataaactcaaataaatcaaactaaacaa 578  Q
    |||||| ||||||||||||||||||||||||| |||| | ||||||    
T  20685682 aagtgcttatgccaatagataaactcaaataagtcaagccaaacaa 20685727  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 48668085 - 48668020
Alignment:
Q  2 gcaagaaatggattggtgattttatataggaatacaggaagagcctgcaaattggaagtatgaaag 67  Q
    ||||||||| |||||  || ||||| |||| ||| |||||||||||||| ||||||||| ||||||    
T  48668085 gcaagaaattgattgaagagtttatctaggtatataggaagagcctgcagattggaagtttgaaag 48668020  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 30191109 - 30191073
Alignment:
Q  528 ctaagaagtgcgtatgccaatagataaactcaaataa 564  Q
    |||| |||||| |||||||||||||||||||||||||    
T  30191109 ctaacaagtgcttatgccaatagataaactcaaataa 30191073  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 40368695 - 40368751
Alignment:
Q  337 cttcacactaatgcgtattctattcatgtcatagatattggacaaagttttatgttt 393  Q
    |||||||||| || || ||| |||||||||||||| ||||||| || ||||||||||    
T  40368695 cttcacactattgtgtgttcgattcatgtcatagagattggacgaaattttatgttt 40368751  T

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