View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11604_high_2 (Length: 495)
Name: NF11604_high_2
Description: NF11604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11604_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 479
Target Start/End: Original strand, 34076594 - 34077060
Alignment:
| Q |
13 |
cacagacagaaaattcacgagtgtatcaccgtccttaagctgaggaacacacacatactcttgtcttcaattctcaacaatgcatatccaacccaaacaa |
112 |
Q |
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| T |
34076594 |
cacagacagaaaattcacgagtgtatcaccgtccttaagctgaggaacacacacatactcttgtcttcaattctcaacaatgcatatccaacccaaacaa |
34076693 |
T |
|
| Q |
113 |
ttcatcacatttaggttggtgaagttttcacgagctaaaaccatttgcgtgtctctttattcacccatacccaccaaactctgtttacgtggtccacacc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34076694 |
ttcatcacatttaggttggtgaagttttcacgagctaaaaccatttgcgtgtctctttattcacccatacccaccaaactctgtttaagtggtccacacc |
34076793 |
T |
|
| Q |
213 |
aaatcaaccacgtaaaaaaccacacctttcttcttttgttcaatctcaaacactgttttatccattaccctttatgcnnnnnnnnnnnnnnnnatgatca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34076794 |
aaatcaaccacgtaaaaaaccacacctttcttcttttgttcaatctcaaacactgttttatccattaccctttatgctttttctttttcttttatgatca |
34076893 |
T |
|
| Q |
313 |
tgatcatgataatgtgaagtgagnnnnnnnggtatattgtgttgcttgctgcatagtgaaggtttcatctttttaagcaaatggaccgacctgcgaacgt |
412 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34076894 |
tgatcatgataatgtgaagtgagtttttttggtatattgtgttgcttgctgcatagtgaaggtttcatctttttaagtaaatggaccgacctgcgaacgt |
34076993 |
T |
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| Q |
413 |
tgttgggccgggaatggacatgccgattatgcatgatagtgatcgctatgaacttgttcgtgatatt |
479 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34076994 |
tgttgggccgggaatggacatgctgattatgcatgatagtgatcgctatgaacttgttcgtgatatt |
34077060 |
T |
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