View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11604_low_3 (Length: 491)

Name: NF11604_low_3
Description: NF11604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11604_low_3
NF11604_low_3
[»] chr4 (15 HSPs)
chr4 (19-478)||(38485510-38486001)
chr4 (280-478)||(21097165-21097367)
chr4 (281-478)||(4168384-4168585)
chr4 (274-432)||(637873-638031)
chr4 (280-463)||(22181101-22181285)
chr4 (280-460)||(27764265-27764449)
chr4 (280-426)||(26447306-26447452)
chr4 (347-478)||(18923351-18923484)
chr4 (280-425)||(45256000-45256145)
chr4 (305-425)||(51836985-51837106)
chr4 (280-394)||(36621627-36621741)
chr4 (285-370)||(50563679-50563764)
chr4 (281-320)||(10472524-10472563)
chr4 (280-320)||(29826606-29826646)
chr4 (280-320)||(50643768-50643808)
[»] chr8 (14 HSPs)
chr8 (280-477)||(32987286-32987485)
chr8 (280-462)||(39022000-39022184)
chr8 (281-478)||(15260689-15260890)
chr8 (281-431)||(8550530-8550682)
chr8 (283-425)||(4836596-4836738)
chr8 (283-425)||(4842041-4842183)
chr8 (283-425)||(7058142-7058284)
chr8 (280-394)||(7614093-7614207)
chr8 (331-425)||(2750101-2750195)
chr8 (281-370)||(15181817-15181906)
chr8 (383-431)||(1208829-1208877)
chr8 (280-351)||(1208734-1208805)
chr8 (398-431)||(39658430-39658463)
chr8 (280-320)||(42433726-42433766)
[»] chr1 (14 HSPs)
chr1 (280-463)||(18056809-18056992)
chr1 (283-478)||(45889624-45889823)
chr1 (294-478)||(23319923-23320111)
chr1 (280-425)||(22348064-22348209)
chr1 (293-425)||(179646-179778)
chr1 (294-425)||(8402206-8402337)
chr1 (296-394)||(30802437-30802535)
chr1 (281-370)||(37639368-37639457)
chr1 (280-370)||(16115876-16115966)
chr1 (281-370)||(35198131-35198220)
chr1 (281-320)||(11421621-11421660)
chr1 (281-320)||(19897760-19897799)
chr1 (283-320)||(34369689-34369726)
chr1 (281-317)||(4097911-4097947)
[»] chr7 (15 HSPs)
chr7 (280-463)||(30428898-30429081)
chr7 (280-463)||(46024052-46024237)
chr7 (283-423)||(46573397-46573537)
chr7 (280-425)||(15974831-15974976)
chr7 (290-394)||(33797966-33798070)
chr7 (281-370)||(5757413-5757502)
chr7 (284-370)||(32090607-32090693)
chr7 (280-351)||(48690920-48690991)
chr7 (280-351)||(28396747-28396818)
chr7 (383-425)||(48305356-48305398)
chr7 (383-425)||(48691112-48691154)
chr7 (383-425)||(28396842-28396884)
chr7 (281-341)||(44141230-44141290)
chr7 (305-351)||(48691042-48691088)
chr7 (281-341)||(48305262-48305322)
[»] scaffold0194 (1 HSPs)
scaffold0194 (283-478)||(27635-27834)
[»] scaffold0097 (1 HSPs)
scaffold0097 (280-478)||(13638-13838)
[»] chr2 (10 HSPs)
chr2 (280-478)||(20709799-20709999)
chr2 (280-425)||(25192917-25193062)
chr2 (280-425)||(18298006-18298151)
chr2 (383-425)||(4579721-4579763)
chr2 (280-351)||(4579787-4579858)
chr2 (281-370)||(25995313-25995402)
chr2 (305-370)||(4281738-4281803)
chr2 (281-341)||(5098743-5098803)
chr2 (283-351)||(14551288-14551355)
chr2 (281-320)||(34464738-34464777)
[»] chr5 (12 HSPs)
chr5 (280-478)||(23335542-23335747)
chr5 (280-463)||(13362795-13362988)
chr5 (280-478)||(25017072-25017257)
chr5 (271-431)||(2826956-2827116)
chr5 (280-416)||(28070057-28070193)
chr5 (358-463)||(42512277-42512384)
chr5 (281-371)||(16668743-16668833)
chr5 (284-370)||(18465506-18465592)
chr5 (383-431)||(34329247-34329293)
chr5 (284-351)||(34329156-34329223)
chr5 (280-323)||(42512224-42512267)
chr5 (281-341)||(33868182-33868242)
[»] chr3 (15 HSPs)
chr3 (281-463)||(39099223-39099409)
chr3 (280-431)||(50754031-50754182)
chr3 (280-425)||(52987545-52987690)
chr3 (280-425)||(51362334-51362478)
chr3 (280-478)||(8718126-8718336)
chr3 (280-478)||(9070013-9070223)
chr3 (280-423)||(19385212-19385355)
chr3 (283-425)||(7045196-7045337)
chr3 (284-392)||(16277342-16277450)
chr3 (293-354)||(17627197-17627258)
chr3 (283-370)||(23699356-23699443)
chr3 (283-370)||(23717811-23717898)
chr3 (283-370)||(23736267-23736354)
chr3 (391-425)||(31852242-31852276)
chr3 (283-315)||(34563352-34563384)
[»] chr6 (8 HSPs)
chr6 (285-431)||(24737580-24737726)
chr6 (280-425)||(33346266-33346411)
chr6 (293-431)||(877246-877384)
chr6 (280-370)||(29157251-29157341)
chr6 (284-370)||(18611218-18611304)
chr6 (280-353)||(15034942-15035015)
chr6 (280-354)||(34399666-34399740)
chr6 (281-323)||(35119261-35119303)
[»] scaffold0238 (1 HSPs)
scaffold0238 (280-404)||(25148-25272)
[»] scaffold0337 (1 HSPs)
scaffold0337 (284-354)||(7046-7116)
[»] scaffold0544 (1 HSPs)
scaffold0544 (280-323)||(10672-10715)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 478
Target Start/End: Complemental strand, 38486001 - 38485510
Alignment:
Q  19 cggttaagattggaagaaca-ggagcagcaagttttgattagttttatcggctacctcctcttaaccagctaacctcctgtacaaggttagtttttgaga 117  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38486001 cggttaagattggaagaaaatggagcagcaagttttgattagttttatcggctacctcctcttaaccagctaacctcctgtacaaggttagtttttgaga 38485902  T
Q  118 gttcagaaacatggttaatactacatactactatggtaaaagaa----------------ttctttcctgatgagttacatcctcaagcaaatgagcatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||| ||                ||||||||||||||||||||||||||||||||||||||||    
T  38485901 gttcagaaacatggttaatactacatactattatggtaaaaaaattcgacagttaagtttttctttcctgatgagttacatcctcaagcaaatgagcatg 38485802  T
Q  202 gatcatttcaacaacatccccannnnnnnngtctatatcccttgtttgttgtgatgcatgctgttgttggcaaaagttat-----------ccttatgca 290  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||             |||||||    
T  38485801 gatcatttcaacaacatcccca--ttttttgtctatatcccttgtttgttgtgatgcatgctgttgttgtcaaaagttatggtgcataaggaattatgca 38485704  T
Q  291 ccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacat 390  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  38485703 ccgtgcataaacgcttcacaaccatcagatctaatgtacacgtgtaataatcctaggcttctcaaaatacattaaatcaaacttcatttgcttcaaacat 38485604  T
Q  391 ttctctcact--aaaacataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 478  Q
    ||||||||||  ||||||||||| |||||  ||||||||||||||||||| ||| ||||||| |||||||| |||||   ||||||||||||||    
T  38485603 ttctctcactaaaaaacataaagatctccctctctctctacaattttcaatattatggaaaaaaaaacgaaaaactcatatgagtcttcatctc 38485510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 280 - 478
Target Start/End: Original strand, 21097165 - 21097367
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||| ||||||  ||||||||||| ||||||| | |||||||||||||||| || |||| | ||| ||||| ||||||||||||||||    
T  21097165 atccttatgcaccgtgtataaacacttcacaaccattagatctagtttacacgtgtaataattctaagcttattaaattacaccaaatcaaacttcattt 21097264  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcat 475  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  21097265 gcttcaaacatttctctcactaaaacataaagctctccctctctctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcat 21097364  T
Q  476 ctc 478  Q
    |||    
T  21097365 ctc 21097367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 281 - 478
Target Start/End: Original strand, 4168384 - 4168585
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttg 380  Q
    ||||||||||||||||||||||  ||||||||||||||||||| | ||||| |||||||||  |||| |||||||| ||||| |||||||||||||||||    
T  4168384 tccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttg 4168483  T
Q  381 cttcaaacatttctctcactaaaacataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatc 476  Q
     |||||||||||||||||||||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  4168484 tttcaaacatttctctcactaaaacataaagctttcactctatctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatc 4168583  T
Q  477 tc 478  Q
    ||    
T  4168584 tc 4168585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 274 - 432
Target Start/End: Original strand, 637873 - 638031
Alignment:
Q  274 aaagttatccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaact 373  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  637873 aaagttatgtttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataattttaggcttctcaaactacaccaaatcaaact 637972  T
Q  374 tcatttgcttcaaacatttctctcactaaaacataaagctctccctctctctacaattt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  637973 tcatttgcttcaaacatttctctcactaaaacataaagctctccctctctctacaattt 638031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 22181285 - 22181101
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    ||||||||||||||||||||||   |||||||||||||||| || | |||||||||||||||  |||| |||||||| ||||| ||||||||||||||||    
T  22181285 atccttatgcaccgtgcataaaaacttcacaaccatcagatttagtgtacacgtgtaataatcctaggtttctcaaactacaccaaatcaaacttcattt 22181186  T
Q  380 gcttcaaacatttctctcactaaaacataaagctct--ccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 463  Q
    || ||||||||||||||||||||||||||||||| |  | |||||||||||| |||||||||||||||||||||||||||||||||    
T  22181185 gcctcaaacatttctctcactaaaacataaagcttttcctctctctctacaa-tttcaacattctggaaaagaaaacgaagaactc 22181101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 280 - 460
Target Start/End: Original strand, 27764265 - 27764449
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||| ||||||||||||||| | |||||||||||||||  || |||||||||| ||||| ||||||||| | ||||    
T  27764265 atccttatgcaccgtgcataaacacttcgcaaccatcagatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaaccttattt 27764364  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctcta----caattttcaacattctggaaaagaaaacgaagaa 460  Q
    |||||||||||||||||||||||||||||||| |||||||||||||     ||||||||||||||||| ||||||||||||||||    
T  27764365 gcttcaaacatttctctcactaaaacataaagttctccctctctctctctccaattttcaacattctgaaaaagaaaacgaagaa 27764449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 280 - 426
Target Start/End: Complemental strand, 26447452 - 26447306
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||| |||||||| |||| ||||| |||||||| |||||||    
T  26447452 atccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattctaggcttcacaaattacaccaaatcaaatttcattt 26447353  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctcta 426  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  26447352 gcttcaaacatttctctcactaaaacataaagttctccctctctcta 26447306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 347 - 478
Target Start/End: Original strand, 18923351 - 18923484
Alignment:
Q  347 gcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaa 446  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||| ||    
T  18923351 gcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttctgtcactaaaacataaaactatccctctctctacaattttcaacattctgaaa 18923450  T
Q  447 aagaaaacgaagaactc--gtgagtcttcatctc 478  Q
    |||||||||||||||||   ||||||||||||||    
T  18923451 aagaaaacgaagaactcagatgagtcttcatctc 18923484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 425
Target Start/End: Original strand, 45256000 - 45256145
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  |||||||| ||||||| || | |||||||||||||||  ||||||| ||||| ||||  ||||||||||||||||    
T  45256000 atccttatgcaccgtgcataaacacttcacaactatcagatatagtgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaaacttcattt 45256099  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  45256100 gcttcaaacatttctctcactaaaacataaagctccccccctctct 45256145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 305 - 425
Target Start/End: Complemental strand, 51837106 - 51836985
Alignment:
Q  305 ttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttca-tttgcttcaaacatttctctcactaaa 403  Q
    |||||||||||||||| || | |||||||||||||||  ||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  51837106 ttcacaaccatcagatttaatgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattttacttcaaacatttctctcactaaa 51837007  T
Q  404 acataaagctctccctctctct 425  Q
    ||||||||||||||||||||||    
T  51837006 acataaagctctccctctctct 51836985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 36621741 - 36621627
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  || |||||| ||| ||||| ||||||||||||||||    
T  36621741 atccttatgcaccgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctatgcttcttaaactacaccaaatcaaacttcattt 36621642  T
Q  380 gcttcaaacatttct 394  Q
    |||||||||||||||    
T  36621641 gcttcaaacatttct 36621627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 50563764 - 50563679
Alignment:
Q  285 tatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    |||||||| |||||||||  ||||||||||||||||||| | |||||||||||||||| |||| |||||||| ||||| |||||||    
T  50563764 tatgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattataggtttctcaaactacaccaaatcaa 50563679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 320
Target Start/End: Original strand, 10472524 - 10472563
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagat 320  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10472524 tccttatgcaccgtgcataaacatttcacaaccatcagat 10472563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 29826646 - 29826606
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagat 320  Q
    ||||||||||||||||||||| |  ||||||||||||||||    
T  29826646 atccttatgcaccgtgcataagcacttcacaaccatcagat 29826606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 50643768 - 50643808
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagat 320  Q
    |||||||||||||||||||||||  |||| |||||||||||    
T  50643768 atccttatgcaccgtgcataaacacttcataaccatcagat 50643808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 280 - 477
Target Start/End: Complemental strand, 32987485 - 32987286
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  32987485 atccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 32987386  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatct 477  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  32987385 gcttcaaacatttctctaactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactcatatgagtcttcatct 32987286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 280 - 462
Target Start/End: Original strand, 39022000 - 39022184
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||| ||||||||||| | |||| ||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  39022000 atccttatgcaccgtgcataaacacttcacaatcatcagatctagtgtacatgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 39022099  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacgaagaact 462  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  39022100 gcttcaaacatttatctcactaaaacataaagctctccctctctctctacaattttcaacattctggaaaagaaaacgaagaact 39022184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 281 - 478
Target Start/End: Complemental strand, 15260890 - 15260689
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttg 380  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| | ||||||| |||||||   |||||||||||| ||||| |||||||||||||||||    
T  15260890 tccttatgcaccgtgcataaacacttcacaaccatcaaatctagtgtacacgtttaataatccaaggcttctcaaactacaccaaatcaaacttcatttg 15260791  T
Q  381 cttcaaacatttctctcactaaaacataaagctctccctct--ctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatc 476  Q
    ||||||| |||||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  15260790 cttcaaatatttctctcactaaaatataaaactctccctctctctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatc 15260691  T
Q  477 tc 478  Q
    ||    
T  15260690 tc 15260689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 281 - 431
Target Start/End: Original strand, 8550530 - 8550682
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttg 380  Q
    ||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  || |||||||||| ||||| |||||||||||||||||    
T  8550530 tccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataagcttctcaaattacaccaaatcaaacttcatttg 8550629  T
Q  381 cttcaaacatttctctcactaaaacataaagctctccctc--tctctacaatt 431  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  8550630 cttcaaacatttctctcactaaaacataaagttctccctctttctctacaatt 8550682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 283 - 425
Target Start/End: Complemental strand, 4836738 - 4836596
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgct 382  Q
    ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  || |||| ||||| ||||| |||||||||||||||||||    
T  4836738 cttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgct 4836639  T
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  4836638 tcaaacatttatctcactaaaacataaagctctccctctctct 4836596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 283 - 425
Target Start/End: Complemental strand, 4842183 - 4842041
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgct 382  Q
    ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  || |||| ||||| ||||| |||||||||||||||||||    
T  4842183 cttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgct 4842084  T
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  4842083 tcaaacatttatctcactaaaacataaagctctccctctctct 4842041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 283 - 425
Target Start/End: Original strand, 7058142 - 7058284
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgct 382  Q
    ||||||||||||||||||||  |||||||||||| |||||| | |||||||||||||||  ||| ||||||||| ||||| |||||||||||||||||||    
T  7058142 cttatgcaccgtgcataaacacttcacaaccatccgatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgct 7058241  T
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  7058242 tcaaacacttctctcactaaaacataaagctctccctctctct 7058284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 280 - 394
Target Start/End: Original strand, 7614093 - 7614207
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    ||||||||||||| |||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  7614093 atccttatgcaccatgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaacttcattt 7614192  T
Q  380 gcttcaaacatttct 394  Q
    |||||||||||||||    
T  7614193 gcttcaaacatttct 7614207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 2750101 - 2750195
Alignment:
Q  331 cgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||||  ||| ||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| ||||    
T  2750101 cgtgtaataatcatagacttctcaaactacaccaaatcaaacttcatttactttaaacatttctctcactaaaacataatgctctccctcactct 2750195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 15181817 - 15181906
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    |||||||||||| |||||||||  ||||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| |||||||    
T  15181817 tccttatgcaccctgcataaacacttcacaagcatcagatctagtgtacacgtgtaataatcttaggtttctcaaactacaccaaatcaa 15181906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 1208829 - 1208877
Alignment:
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctctacaatt 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1208829 tcaaacatttctctcactaaaacataaagctctccctctctctacaatt 1208877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 1208734 - 1208805
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttc 351  Q
    |||||||||||||||||||||||  || |||||||| ||||||| | |||||||||||||||  ||||||||    
T  1208734 atccttatgcaccgtgcataaacactttacaaccataagatctagtgtacacgtgtaataatcctaggcttc 1208805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 39658463 - 39658430
Alignment:
Q  398 actaaaacataaagctctccctctctctacaatt 431  Q
    ||||||||||||||||||||||||||||||||||    
T  39658463 actaaaacataaagctctccctctctctacaatt 39658430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 42433726 - 42433766
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagat 320  Q
    ||||||||||||||||||||| |  ||||||||||||||||    
T  42433726 atccttatgcaccgtgcataagcacttcacaaccatcagat 42433766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 7e-78; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 280 - 463
Target Start/End: Original strand, 18056809 - 18056992
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  18056809 atccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 18056908  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 463  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18056909 gcttcaaacatttctctcactaaaacataaaactctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 18056992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 283 - 478
Target Start/End: Original strand, 45889624 - 45889823
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgct 382  Q
    ||||| |||||||||||||| ||| |||||||||||||||| |||||| |||||||||| |||||||||||||| ||||| |||||||| ||||||| ||    
T  45889624 cttatccaccgtgcataaacattttacaaccatcagatctagtatacatgtgtaataatcttaggcttctcaaactacaccaaatcaaatttcatttcct 45889723  T
Q  383 tcaaacatttctctcactaaaacataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 478  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||| |||||||||||||||||||   ||||||||||||||    
T  45889724 tcaaacatttctctcactaaaacataaagttctccctctctctctacaattttcaatattctgaaaaagaaaacgaagaactcagatgagtcttcatctc 45889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 294 - 478
Target Start/End: Complemental strand, 23320111 - 23319923
Alignment:
Q  294 tgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttc 393  Q
    |||||||||  ||||||||||||||||||| | |||||||||||||||  ||| ||||||||| ||||| |||||||||||||||||||| |||||||||    
T  23320111 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgctttaaacatttc 23320012  T
Q  394 tctcactaaaacataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 478  Q
    |||||||||||||||||||| ||||||  ||||||| |||||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  23320011 tctcactaaaacataaagctatccctctttctctactattttcaaaattctggaaaagaaaacgaagaactcagatgagtcttcatctc 23319923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 280 - 425
Target Start/End: Original strand, 22348064 - 22348209
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||| ||||||||  ||||||||||||| ||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  22348064 atccttatgcaccgcgcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 22348163  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22348164 gcttcaaacatttctctcactaaaacataaagctctccctctctct 22348209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 293 - 425
Target Start/End: Original strand, 179646 - 179778
Alignment:
Q  293 gtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacattt 392  Q
    ||||||||||  ||||||||||||||||||| | |||||||||||||||   | |||||||||| ||||| |||||||||||||||||||| ||||||||    
T  179646 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcccaagcttctcaaactacaccaaatcaaacttcatttgcttaaaacattt 179745  T
Q  393 ctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||||||||||||||||||||||||||    
T  179746 ctctcactaaaacataaagctctccctctctct 179778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 294 - 425
Target Start/End: Complemental strand, 8402337 - 8402206
Alignment:
Q  294 tgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttc 393  Q
    |||||||||  |||| |||||||||||||| | ||||| |||||||||  |||| |||||||| || || |||||||||||||| |||||||||||||||    
T  8402337 tgcataaacacttcataaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactaaaccaaatcaaacttcatctgcttcaaacatttc 8402238  T
Q  394 tctcactaaaacataaagctctccctctctct 425  Q
    ||||||||||||||||||||||| ||||||||    
T  8402237 tctcactaaaacataaagctctctctctctct 8402206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 30802437 - 30802535
Alignment:
Q  296 cataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttct 394  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  30802437 cataaacatttcacaaccatcagatctagtgtacacgtgtaataatcttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttct 30802535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 37639368 - 37639457
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    |||||||||||| |||||||||  ||||||||||||||||||| | |||||||||||||||| ||| ||||||||| ||||| |||||||    
T  37639368 tccttatgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattatagacttctcaaactacaccaaatcaa 37639457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 16115876 - 16115966
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    |||||||||||||||||||||||  ||||||||||||| ||||| | |||||||||||||||   || ||||| ||| ||||| |||||||    
T  16115876 atccttatgcaccgtgcataaacacttcacaaccatcaaatctaatgtacacgtgtaataatccaagacttcttaaactacaccaaatcaa 16115966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 35198220 - 35198131
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    |||||||||||| |||||||||  |||||| |||||||||||| | |||||||||||||||  ||| ||| ||||| ||||| |||||||    
T  35198220 tccttatgcaccctgcataaacacttcacagccatcagatctagtgtacacgtgtaataatcctagacttttcaaactacacaaaatcaa 35198131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 320
Target Start/End: Original strand, 11421621 - 11421660
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  11421621 tccttatgcaccgtgcataaacacttcacaaccatcagat 11421660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 19897799 - 19897760
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagat 320  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  19897799 tccttatgcaccgtgcataaacatatcacaaccatcagat 19897760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 34369689 - 34369726
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagat 320  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  34369689 cttatgcaccgtgcataaacacttcacaaccatcagat 34369726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 4097947 - 4097911
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatca 317  Q
    ||||||||||||||||||||||  |||||||||||||    
T  4097947 tccttatgcaccgtgcataaacacttcacaaccatca 4097911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 280 - 463
Target Start/End: Original strand, 30428898 - 30429081
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  30428898 atccttatgcaccgtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 30428997  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 463  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30428998 gcttcaaacatttatctcactaaaacataaagctccccctctctctacaattttcaacattctagaaaagaaaacgaagaactc 30429081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 280 - 463
Target Start/End: Original strand, 46024052 - 46024237
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  |||||||||||||||| || | |||||||||||||||  ||| ||||||||| |||| |||||||||||||||||    
T  46024052 atccttatgcaccgtgcataaacacttcacaaccatcagatatagtgtacacgtgtaataatcctagacttctcaaactacattaaatcaaacttcattt 46024151  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactc 463  Q
    |||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  46024152 gcttcaaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattttggaaaagaaaacgaagaactc 46024237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 283 - 423
Target Start/End: Complemental strand, 46573537 - 46573397
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgct 382  Q
    ||||||||||||  ||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||    
T  46573537 cttatgcaccgtatataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgct 46573438  T
Q  383 tcaaacatttctctcactaaaacataaagctctccctctct 423  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46573437 tcaaacatttctctcactaaaacataaagctctccctctct 46573397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 15974976 - 15974831
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||| || || | ||||| ||||||||| |||||||| ||||| ||||| |||||||||||||| |    
T  15974976 atccttatgcaccgtgcataaacacttcacaaccatcatatttagtgtacacatgtaataatcttaggcttatcaaagtacaccaaatcaaacttcatct 15974877  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||    
T  15974876 gcttcaaacatttctctcactaaaacataaagctctctccctctct 15974831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 290 - 394
Target Start/End: Original strand, 33797966 - 33798070
Alignment:
Q  290 accgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaaca 389  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||  ||| ||||||||| ||||  ||||||||||||||||||||||||||    
T  33797966 accgtgcataaacatttcacaaccatcagatctagtatacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaaca 33798065  T
Q  390 tttct 394  Q
    |||||    
T  33798066 tttct 33798070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 5757413 - 5757502
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    ||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||| ||||||||| ||||| |||||||    
T  5757413 tccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaa 5757502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 32090607 - 32090693
Alignment:
Q  284 ttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    ||||||||| |||||||||  |||| |||||||| ||||| |||||||||||||||||  ||||||||||||| ||||| |||||||    
T  32090607 ttatgcaccctgcataaacaattcagaaccatcaaatctagtatacacgtgtaataatcataggcttctcaaactacaccaaatcaa 32090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 48690920 - 48690991
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttc 351  Q
    |||||||||||||||||||||||  ||||||||||||| ||||| | |||||||||||||||  ||||||||    
T  48690920 atccttatgcaccgtgcataaacagttcacaaccatcaaatctagtgtacacgtgtaataatcataggcttc 48690991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 28396747 - 28396818
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttc 351  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| | |||| | ||||||||  ||||||||    
T  28396747 atccttatgcaccgtgcataaacatttcacaatcatcagatctagtgtacaagagtaataatcctaggcttc 28396818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 48305356 - 48305398
Alignment:
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  48305356 tcaaacatttctctcaataaaacataaagctctccctctctct 48305398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 48691112 - 48691154
Alignment:
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  48691112 tcaaaaatttctctcactaaaacataaagctctccctctctct 48691154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 28396842 - 28396884
Alignment:
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  28396842 tcaaacatttctctcaataaaacataaagttctccctctctct 28396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 44141290 - 44141230
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataat 341  Q
    |||||||||||| |||||||||  |||||||||||| ||| || | |||||||||||||||    
T  44141290 tccttatgcaccctgcataaacacttcacaaccatctgatttagtgtacacgtgtaataat 44141230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 48691042 - 48691088
Alignment:
Q  305 ttcacaaccatcagatctactatacacgtgtaataattttaggcttc 351  Q
    ||||||||||||||||||| | |||||||||||||||  ||||||||    
T  48691042 ttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttc 48691088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 48305262 - 48305322
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataat 341  Q
    ||||||||||||||||||||||  || |||| |||| |||||| | ||||||| |||||||    
T  48305262 tccttatgcaccgtgcataaacactttacaaacatcggatctagtgtacacgtataataat 48305322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 283 - 478
Target Start/End: Original strand, 27635 - 27834
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgct 382  Q
    |||||| |||||||||||||  |||||||| || ||||||| | |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  27635 cttatgtaccgtgcataaacacttcacaactataagatctagtgtacacgtgtaataattctaggcttctcaaactacaccaaatcaaacttcatttgct 27734  T
Q  383 tcaaacatttctctcactaaaacataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 478  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  27735 tcaaacatttctctcactaaaacataaatctctccctctttctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 27834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 280 - 478
Target Start/End: Original strand, 13638 - 13838
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||| ||||||||||||||  ||||||||||||||||||| | ||||| |||||||||  || |||||||||| ||||| ||||||||||||||||    
T  13638 atccttatccaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcattt 13737  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatct 477  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||   |||||||||||||    
T  13738 gcttcaaacatttctctcactaaaacataaagttctccctctctctacaattttcaactctctggaaaagaaaacgaagaactcagatgagtcttcatct 13837  T
Q  478 c 478  Q
    |    
T  13838 c 13838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 280 - 478
Target Start/End: Original strand, 20709799 - 20709999
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||| ||||||||||||||  ||||||||||||||||||| | ||||| |||||||||  || |||||||||| ||||| ||||||||||||||||    
T  20709799 atccttatccaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcattt 20709898  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatct 477  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||   |||||||||||||    
T  20709899 gcttcaaacatttctctcactaaaacataaagttctccctctctctacaattttcaactctctggaaaagaaaacgaagaactcagatgagtcttcatct 20709998  T
Q  478 c 478  Q
    |    
T  20709999 c 20709999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 280 - 425
Target Start/End: Original strand, 25192917 - 25193062
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  25192917 atccttatgcaccgtgcataaacacttcacaaccattagatctagtgtacacgtgtaataattctaggcttctcaaattacaccaaatcaaacttcattt 25193016  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  25193017 gcttcaaacatttctctcactaaaacataaagctctccctctctct 25193062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 18298151 - 18298006
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  18298151 atccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 18298052  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||||    
T  18298051 gcttcaagcgtttctctcactaaaacataaatctctccctctctct 18298006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 4579763 - 4579721
Alignment:
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4579763 tcaaacatttctctcactaaaacataaagctctccctctctct 4579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 4579858 - 4579787
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttc 351  Q
    ||||||||||||| |||||||||  || |||||||||||||||| | ||||||||||||||| ||| |||||    
T  4579858 atccttatgcaccatgcataaacactttacaaccatcagatctagtgtacacgtgtaataatcttatgcttc 4579787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 25995313 - 25995402
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    |||||||||||  ||||||||   |||||||||||||||| || | |||||||||||||||  |||||| |||||| ||||| |||||||    
T  25995313 tccttatgcactctgcataaatacttcacaaccatcagatttagtgtacacgtgtaataatcctaggctactcaaattacaccaaatcaa 25995402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 4281803 - 4281738
Alignment:
Q  305 ttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    ||||||||||||||||||| | |||||||||||||||  |||| |||||||| ||||  |||||||    
T  4281803 ttcacaaccatcagatctagtgtacacgtgtaataatcctaggtttctcaaactacagcaaatcaa 4281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 5098743 - 5098803
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataat 341  Q
    |||||||||||| |||||||||  ||||||||||||| || || | |||||||||||||||    
T  5098743 tccttatgcaccctgcataaacacttcacaaccatcaaatttattgtacacgtgtaataat 5098803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 14551355 - 14551288
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttc 351  Q
    ||||||||| ||||||||||  ||||||||||||||||||| | |||| ||||||||||  ||||||||    
T  14551355 cttatgcac-gtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttc 14551288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 320
Target Start/End: Original strand, 34464738 - 34464777
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagat 320  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  34464738 tccttatgcaccgtgcataaacatatcacaaccatcagat 34464777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 280 - 478
Target Start/End: Complemental strand, 23335747 - 23335542
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| |||||||| |||||||    
T  23335747 atccgtatgcaccgtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaagttcattt 23335648  T
Q  380 gcttcaaacatttctctcact-aaaacataaagctctcc----ctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtctt 472  Q
    || |||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||| ||||||||||||| ||||||||   ||||||||    
T  23335647 gcatcaaacatttctctcactaaaaacataaagctctccctctctctctctacaattttcaacattatggaaaagaaaacaaagaactcagatgagtctt 23335548  T
Q  473 catctc 478  Q
    ||||||    
T  23335547 catctc 23335542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 280 - 463
Target Start/End: Original strand, 13362795 - 13362988
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | || ||||||||||||  ||||||||||||| ||||| |||||||| |||||||    
T  13362795 atccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtatacgtgtaataatcataggcttctcaaactacaccaaatcaaaattcattt 13362894  T
Q  380 gcttcaaacatttctctcactaaaacataaagc----------tctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 463  Q
    |||||||||||||||||||||||||||||||||          |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13362895 gcttcaaacatttctctcactaaaacataaagctttccctctgtctctctctctctacaattttcaacattctggaaaagaaaacgaagaactc 13362988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 280 - 478
Target Start/End: Complemental strand, 25017257 - 25017072
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||| ||||||||               ||||||||    
T  25017257 atccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattttaggtttctcaaa---------------cttcattt 25017173  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatct 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||    
T  25017172 gcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagtactcagatgagtcttcatct 25017073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 271 - 431
Target Start/End: Complemental strand, 2827116 - 2826956
Alignment:
Q  271 gcaaaagttatccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    |||||||||||| |||| ||||||||||||||  || |||||||||||||||| | |||||||||||| || |||||||||||||| ||||| |||||||    
T  2827116 gcaaaagttatctttatccaccgtgcataaacactttacaaccatcagatctagtgtacacgtgtaattatcttaggcttctcaaactacaccaaatcaa 2827017  T
Q  371 acttcatttgcttcaaacatttctctcactaaaacataaagctctccctctctctacaatt 431  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2827016 atttcatttgcttcaaacatttatctcactaaaacataaagctctccctctctctacaatt 2826956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 416
Target Start/End: Complemental strand, 28070193 - 28070057
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  |||||||| |||||||||| | |||||||||||||||  ||| ||||||||| ||||| ||||||||||||||||    
T  28070193 atccttatgcaccgtgcataaacacttcacaactatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcattt 28070094  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctc 416  Q
    |||||||||||||||||||||||||||||||||||||    
T  28070093 gcttcaaacatttctctcactaaaacataaagctctc 28070057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 358 - 463
Target Start/End: Original strand, 42512277 - 42512384
Alignment:
Q  358 tacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacg 455  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  42512277 tacaccaaatcaaacttcatttacttcaaacatttctctcactaaaacctaaagctctccctctctctctacaattttcaacattctggaaaagaaaacg 42512376  T
Q  456 aagaactc 463  Q
    ||||||||    
T  42512377 aagaactc 42512384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 371
Target Start/End: Complemental strand, 16668833 - 16668743
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaa 371  Q
    |||||||||||| |||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||    
T  16668833 tccttatgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaa 16668743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 18465592 - 18465506
Alignment:
Q  284 ttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    ||||||| | |||||||||  ||||||||||||||||||| | ||||||||||||||| |||| ||||||||| ||||| |||||||    
T  18465592 ttatgcatcctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcttagacttctcaaactacaccaaatcaa 18465506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 34329247 - 34329293
Alignment:
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctctacaatt 431  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  34329247 tcaaacatttctctcactaaaacataaagctct--ctctctctacaatt 34329293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 34329156 - 34329223
Alignment:
Q  284 ttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttc 351  Q
    |||||||||||||||||||  ||||||||||||||||||| | ||||||  |||||||  ||||||||    
T  34329156 ttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgaataataatcataggcttc 34329223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 42512224 - 42512267
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatcta 323  Q
    |||||||| ||||||||||||||  |||||||||||||||||||    
T  42512224 atccttatccaccgtgcataaacacttcacaaccatcagatcta 42512267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 33868182 - 33868242
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataat 341  Q
    |||||||||||| |||||||||  |||||||||||| ||| || | |||| ||||||||||    
T  33868182 tccttatgcaccctgcataaacacttcacaaccatctgatttattttacatgtgtaataat 33868242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 281 - 463
Target Start/End: Original strand, 39099223 - 39099409
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttg 380  Q
    |||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  39099223 tccttatgcaccgtgcataaatatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacactaaatcaaacttcatttg 39099322  T
Q  381 cttcaaacatttctctcactaaaacataaagctctccctc----tctctacaattttcaacattctggaaaagaaaacgaagaactc 463  Q
     || ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||| | |||| |||||||||    
T  39099323 tttaaaacatttctctcactaaaacataaagctctccctctctttctctacaattttcaacattctcgaagaaaaaatgaagaactc 39099409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 280 - 431
Target Start/End: Original strand, 50754031 - 50754182
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  50754031 atccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 50754130  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctctacaatt 431  Q
    | |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50754131 gattcaaacacttctctcactaaaacataaagctctccctctctctacaatt 50754182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 52987690 - 52987545
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  52987690 atccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 52987591  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  52987590 gcttcaaatatttctctcactaaaacataaagctctccctctctct 52987545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 51362478 - 51362334
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  |||||||||||||||| || | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  51362478 atccttatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattt 51362379  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    ||||||||||||||||||||||||||||||| || |||||||||||    
T  51362378 gcttcaaacatttctctcactaaaacataaa-ctttccctctctct 51362334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 478
Target Start/End: Original strand, 8718126 - 8718336
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    ||||||||||||||| ||||||   ||||||||||||||||||| | |||| ||||||||||  ||||||||| ||| ||||| ||||||||||||||||    
T  8718126 atccttatgcaccgtacataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcattt 8718225  T
Q  380 gcttcaaacatttctctcactaaaacataaag----------ctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtga 467  Q
    | || |||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||||||||||||||||| ||   |||    
T  8718226 gtttaaaacatttctctcactaaaacataaagctttccctctctctctctctctctacaattttcaacattctggaaaagaaaacgaagaaatcagatga 8718325  T
Q  468 gtcttcatctc 478  Q
    |||||||||||    
T  8718326 gtcttcatctc 8718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 478
Target Start/End: Original strand, 9070013 - 9070223
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    ||||||||||||||| ||||||   ||||||||||||||||||| | |||| ||||||||||  ||||||||| ||| ||||| ||||||||||||||||    
T  9070013 atccttatgcaccgtacataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcattt 9070112  T
Q  380 gcttcaaacatttctctcactaaaacataaag----------ctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtga 467  Q
    | || |||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||||||||||||||||| ||   |||    
T  9070113 gtttaaaacatttctctcactaaaacataaagctttccctctctctctctctctctacaattttcaacattctggaaaagaaaacgaagaaatcagatga 9070212  T
Q  468 gtcttcatctc 478  Q
    |||||||||||    
T  9070213 gtcttcatctc 9070223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 280 - 423
Target Start/End: Complemental strand, 19385355 - 19385212
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  |||||||||||||||| || | |||||||||||||||| ||||||||||||| ||||  ||||||||||||||||    
T  19385355 atccttatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataattctaggcttctcaaactacatcaaatcaaacttcattt 19385256  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctct 423  Q
    ||||||| |||||| |||||||||||||||| ||||||||||||    
T  19385255 gcttcaatcatttccctcactaaaacataaaactctccctctct 19385212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 283 - 425
Target Start/End: Complemental strand, 7045337 - 7045196
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgct 382  Q
    ||||||||||||| ||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||||| | ||||  ||||||||||| |||||||    
T  7045337 cttatgcaccgtgtataaacacttcacaaccatcagatctagtgtacacgtgtaataatcgtaggcttctcagactacatcaaatcaaactt-atttgct 7045239  T
Q  383 tcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7045238 tcaaacatttctctcactaaaacataaagctctccctctctct 7045196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 392
Target Start/End: Complemental strand, 16277450 - 16277342
Alignment:
Q  284 ttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgctt 383  Q
    |||||||||||||||||||  ||||||||||||| ||||| | |||||||||||||||  || |||||||||| ||||| ||||||||||||||||| ||    
T  16277450 ttatgcaccgtgcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgttt 16277351  T
Q  384 caaacattt 392  Q
    |||||||||    
T  16277350 caaacattt 16277342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 17627258 - 17627197
Alignment:
Q  293 gtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctca 354  Q
    ||||||||||  ||||||||||||||||||| | |||||||||||||||| |||| ||||||    
T  17627258 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattctaggtttctca 17627197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 370
Target Start/End: Original strand, 23699356 - 23699443
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    ||||| |||| |||||||||  ||||||||||||| ||||| | |||||||||||||||  ||||||| ||||| ||||  |||||||    
T  23699356 cttatacaccctgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 370
Target Start/End: Original strand, 23717811 - 23717898
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    ||||| |||| |||||||||  ||||||||||||| ||||| | |||||||||||||||  ||||||| ||||| ||||  |||||||    
T  23717811 cttatacaccctgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23717898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 370
Target Start/End: Original strand, 23736267 - 23736354
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    ||||| |||| |||||||||  ||||||||||||| ||||| | |||||||||||||||  ||||||| ||||| ||||  |||||||    
T  23736267 cttatacaccctgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23736354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 31852242 - 31852276
Alignment:
Q  391 ttctctcactaaaacataaagctctccctctctct 425  Q
    ||||||||||||||||||||| |||||||||||||    
T  31852242 ttctctcactaaaacataaagttctccctctctct 31852276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 34563384 - 34563352
Alignment:
Q  283 cttatgcaccgtgcataaacgtttcacaaccat 315  Q
    |||||||||||||||||||| ||||||||||||    
T  34563384 cttatgcaccgtgcataaacatttcacaaccat 34563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 285 - 431
Target Start/End: Complemental strand, 24737726 - 24737580
Alignment:
Q  285 tatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttc 384  Q
    ||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||| ||| ||||| |||||||||||||||||||||    
T  24737726 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgcttc 24737627  T
Q  385 aaacatttctctcactaaaacataaagctctccctctctctacaatt 431  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  24737626 aaacatttctctcactaaaacataaaactctccctctctctacaatt 24737580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 33346411 - 33346266
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  ||||||||||||| ||||| | |||||||||||||||| ||||||||||||| |||   |||||||||||| |||    
T  33346411 atccttatgcaccgtgcataaacacttcacaaccatcaaatctagtgtacacgtgtaataattataggcttctcaaactacgtcaaatcaaacttcgttt 33346312  T
Q  380 gcttcaaacatttctctcactaaaacataaagctctccctctctct 425  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  33346311 gcttcaaacatttctctcactaaaacataaagttctccctctctct 33346266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 293 - 431
Target Start/End: Original strand, 877246 - 877384
Alignment:
Q  293 gtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacattt 392  Q
    ||||||||||  ||||||||||| |||||   | ||||||| |||||||  || |||||||||| ||||| |||||||||||||||||||||||||||||    
T  877246 gtgcataaacacttcacaaccattagatcaggtgtacacgtataataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 877345  T
Q  393 ctctcactaaaacataaagctctccctctctctacaatt 431  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  877346 ctctcactaaaacaaaaagctctccctctctctacaatt 877384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 29157251 - 29157341
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    |||||||||||||||||||||||  || |||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| |||||||    
T  29157251 atccttatgcaccgtgcataaacactttacaaccatcagatctagtgtacacgtgtaataatactaggcttctcaaactacaccaaatcaa 29157341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 18611218 - 18611304
Alignment:
Q  284 ttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 370  Q
    ||||||||  |||||||||  ||||||||||||||||||| | |||||||||||||||  |||||||||||||  |||| |||||||    
T  18611218 ttatgcactctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaaccacaccaaatcaa 18611304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 15035015 - 15034942
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctc 353  Q
    ||||||||||||||||||||||   ||||||||||||||||||| | |||| ||||||||||  ||||||||||    
T  15035015 atccttatgcaccgtgcataaatcattcacaaccatcagatctagtgtacatgtgtaataatcataggcttctc 15034942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 34399666 - 34399740
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctca 354  Q
    |||||||||||||||  ||||||  ||||||| ||||||||||| | |||||||||||||||  |||||||||||    
T  34399666 atccttatgcaccgtatataaacacttcacaatcatcagatctagtgtacacgtgtaataatcctaggcttctca 34399740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 35119261 - 35119303
Alignment:
Q  281 tccttatgcaccgtgcataaacgtttcacaaccatcagatcta 323  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  35119261 tccttatgcaccgtgcataaacacttcacaaccatcagatcta 35119303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 280 - 404
Target Start/End: Complemental strand, 25272 - 25148
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcattt 379  Q
    |||||||||||||||||||||||  |||||||||||||||| || | ||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||    
T  25272 atccttatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtcataatcttaggtttctcaaactacaccaaatcaaacttcattt 25173  T
Q  380 gcttcaaacatttctctcactaaaa 404  Q
    |||||||||||||||||||||||||    
T  25172 gcttcaaacatttctctcactaaaa 25148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 7046 - 7116
Alignment:
Q  284 ttatgcaccgtgcataaacgtttcacaaccatcagatctactatacacgtgtaataattttaggcttctca 354  Q
    |||| ||||||||||||||  ||||||||||||||||||| | ||||| |||||||||  |||| ||||||    
T  7046 ttatacaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctaggtttctca 7116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 323
Target Start/End: Complemental strand, 10715 - 10672
Alignment:
Q  280 atccttatgcaccgtgcataaacgtttcacaaccatcagatcta 323  Q
    |||||||| ||||||||||||||  |||||||||||||||||||    
T  10715 atccttatacaccgtgcataaacacttcacaaccatcagatcta 10672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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