View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11604_low_4 (Length: 263)
Name: NF11604_low_4
Description: NF11604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11604_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 63 - 253
Target Start/End: Complemental strand, 28636038 - 28635847
Alignment:
| Q |
63 |
tgtaactgaaagtcaaaaaccaattagcca-gaagaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccaatagcttgaaaacgagag |
161 |
Q |
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| T |
28636038 |
tgtaactgaaagtcaaaaaccaattagccaagaagaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccgatagcttgaaaacgagac |
28635939 |
T |
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| Q |
162 |
agcactaaggatattgagtcattatggtttggaattaattcttccaccacagttgcatagctttctttgctatcccttcttccactcttcat |
253 |
Q |
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| T |
28635938 |
aacactaaggatattgagtcattatggtttggaatgaattcttccaccacatttgcataactttctttgctatcccttcttccactcttcat |
28635847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 28656529 - 28656354
Alignment:
| Q |
79 |
aaaccaattagcca-gaagaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccaatagcttgaaaacgagagagcactaaggatattg |
177 |
Q |
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| T |
28656529 |
aaaccaattagccaagaagaatgtttggtacctaaaagagcaaccgtggcttcaacatcaacaccaatagcttggaaacgagtgagcactaaggacatgg |
28656430 |
T |
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| Q |
178 |
agtcattatggtttggaattaattcttccaccacagttgcatagctttctttgctatcccttcttccactcttcat |
253 |
Q |
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| T |
28656429 |
aggcattatggcttggaatggattcttccaccaccgttacatagctttctttgctatcccttcttccactcttcat |
28656354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 95 - 253
Target Start/End: Complemental strand, 28606095 - 28605937
Alignment:
| Q |
95 |
agaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccaatagcttgaaaacgagagagcactaaggatattgagtcattatggtttgga |
194 |
Q |
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| T |
28606095 |
agaatatttggtacctaaaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcactgaggatattgagtcattatgatttgga |
28605996 |
T |
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| Q |
195 |
attaattcttccaccacagttgcatagctttctttgctatcccttcttccactcttcat |
253 |
Q |
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| T |
28605995 |
atgaattgttccaccacctttacatagctttctttgctatcctttcgtccactcttcat |
28605937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 253
Target Start/End: Complemental strand, 28663542 - 28663394
Alignment:
| Q |
105 |
gtacctaaaagagcaaccgtggcttcaacgtcaacaccaatagcttgaaaacgagagagcactaaggatattgagtcattatggtttggaattaattctt |
204 |
Q |
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| T |
28663542 |
gtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatatggagtcattatgatttggaatgaattctt |
28663443 |
T |
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| Q |
205 |
ccaccacagttgcatagctttctttgctatcccttcttccactcttcat |
253 |
Q |
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| T |
28663442 |
ctaccattgttacatggctttctttgccatcccttcgtcctgtcttcat |
28663394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 28636107 - 28636063
Alignment:
| Q |
23 |
tttattatgtttatgtttgacttttgaaagtaaatgttaatgtaa |
67 |
Q |
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| T |
28636107 |
tttattatgtttatggttgacttttgaaagtaaatgttaatgtaa |
28636063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 28656602 - 28656553
Alignment:
| Q |
18 |
ggtggtttattatgtttatgtttgacttttgaaagtaaatgttaatgtaa |
67 |
Q |
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| T |
28656602 |
ggtggttaattatgtttatgtttgtgttttgacagtaaatgtttatgtaa |
28656553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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