View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11605_high_10 (Length: 233)

Name: NF11605_high_10
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11605_high_10
NF11605_high_10
[»] scaffold0044 (1 HSPs)
scaffold0044 (7-229)||(42347-42569)
[»] chr4 (27 HSPs)
chr4 (94-225)||(38093629-38093760)
chr4 (136-221)||(55729117-55729202)
chr4 (108-221)||(6410283-6410396)
chr4 (99-196)||(12485109-12485206)
chr4 (137-196)||(16620616-16620675)
chr4 (8-58)||(7230277-7230327)
chr4 (111-181)||(12466354-12466424)
chr4 (99-181)||(12468985-12469067)
chr4 (8-53)||(4059250-4059295)
chr4 (9-61)||(30380524-30380576)
chr4 (7-58)||(2186346-2186397)
chr4 (7-58)||(52270043-52270094)
chr4 (8-58)||(20799408-20799458)
chr4 (8-58)||(36203233-36203283)
chr4 (8-58)||(37193246-37193296)
chr4 (8-58)||(38453262-38453312)
chr4 (8-58)||(42845022-42845072)
chr4 (8-54)||(46676512-46676558)
chr4 (8-58)||(49473642-49473692)
chr4 (8-58)||(50362153-50362203)
chr4 (8-49)||(1432862-1432903)
chr4 (11-68)||(12322660-12322717)
chr4 (8-57)||(29908054-29908103)
chr4 (8-61)||(42316838-42316891)
chr4 (7-56)||(56497621-56497670)
chr4 (7-63)||(11166678-11166734)
chr4 (7-55)||(14542773-14542821)
[»] chr5 (18 HSPs)
chr5 (88-221)||(12156780-12156913)
chr5 (7-57)||(5145081-5145131)
chr5 (8-58)||(16133079-16133129)
chr5 (9-58)||(17210724-17210773)
chr5 (9-58)||(36321509-36321558)
chr5 (7-58)||(6489004-6489055)
chr5 (7-58)||(15889408-15889459)
chr5 (7-58)||(24408492-24408543)
chr5 (8-58)||(3445261-3445311)
chr5 (8-58)||(6624773-6624823)
chr5 (12-58)||(13220638-13220684)
chr5 (8-58)||(16701595-16701645)
chr5 (8-58)||(33645703-33645753)
chr5 (8-58)||(37932327-37932377)
chr5 (11-55)||(2591045-2591089)
chr5 (12-56)||(8902794-8902838)
chr5 (7-55)||(22498942-22498990)
chr5 (10-58)||(34436848-34436896)
[»] chr2 (22 HSPs)
chr2 (90-202)||(38530913-38531025)
chr2 (88-188)||(14950045-14950144)
chr2 (8-67)||(10735845-10735904)
chr2 (7-56)||(19179063-19179112)
chr2 (7-56)||(36013942-36013991)
chr2 (8-56)||(24593375-24593423)
chr2 (9-56)||(18231488-18231535)
chr2 (7-54)||(34903518-34903565)
chr2 (7-58)||(35372952-35373003)
chr2 (8-58)||(40032881-40032932)
chr2 (7-58)||(43117203-43117254)
chr2 (9-63)||(9383224-9383278)
chr2 (9-55)||(20120736-20120782)
chr2 (8-58)||(20565089-20565139)
chr2 (8-58)||(21482533-21482583)
chr2 (8-54)||(40099397-40099443)
chr2 (7-56)||(24393244-24393293)
chr2 (8-56)||(7413203-7413251)
chr2 (8-56)||(12124544-12124592)
chr2 (8-52)||(12124687-12124731)
chr2 (9-57)||(19156179-19156227)
chr2 (8-64)||(35820315-35820371)
[»] chr6 (10 HSPs)
chr6 (113-221)||(30845832-30845940)
chr6 (10-58)||(1514177-1514225)
chr6 (10-58)||(17382081-17382129)
chr6 (7-58)||(20744135-20744186)
chr6 (8-58)||(18256880-18256930)
chr6 (9-55)||(28757039-28757085)
chr6 (9-58)||(788863-788912)
chr6 (12-61)||(17829326-17829375)
chr6 (9-58)||(32053785-32053834)
chr6 (10-58)||(10780123-10780171)
[»] chr1 (18 HSPs)
chr1 (94-217)||(14350664-14350786)
chr1 (88-196)||(32058962-32059070)
chr1 (8-56)||(5907798-5907846)
chr1 (8-56)||(17283950-17283998)
chr1 (11-59)||(34733396-34733444)
chr1 (8-56)||(38448880-38448928)
chr1 (7-58)||(21400036-21400087)
chr1 (7-58)||(42045385-42045436)
chr1 (8-58)||(37098495-37098545)
chr1 (8-54)||(44507944-44507990)
chr1 (8-58)||(49875613-49875663)
chr1 (8-56)||(15803251-15803299)
chr1 (8-56)||(19620575-19620623)
chr1 (8-64)||(25532964-25533020)
chr1 (7-55)||(28039873-28039921)
chr1 (8-56)||(45140020-45140068)
chr1 (8-56)||(47528461-47528509)
chr1 (8-52)||(50638930-50638974)
[»] scaffold0157 (1 HSPs)
scaffold0157 (99-196)||(35271-35368)
[»] chr8 (12 HSPs)
chr8 (8-58)||(27750918-27750968)
chr8 (104-196)||(6444352-6444444)
chr8 (7-58)||(17704010-17704061)
chr8 (8-56)||(19778064-19778112)
chr8 (7-55)||(30623293-30623341)
chr8 (13-56)||(14902010-14902053)
chr8 (7-58)||(39821881-39821932)
chr8 (9-56)||(41188855-41188902)
chr8 (8-58)||(11708983-11709033)
chr8 (8-58)||(27587218-27587268)
chr8 (9-57)||(16081304-16081352)
chr8 (8-56)||(31888025-31888073)
[»] scaffold0040 (2 HSPs)
scaffold0040 (8-69)||(56770-56831)
scaffold0040 (8-56)||(53791-53839)
[»] chr7 (20 HSPs)
chr7 (7-55)||(30296333-30296381)
chr7 (8-56)||(41029271-41029319)
chr7 (8-55)||(25888900-25888947)
chr7 (9-56)||(32566056-32566103)
chr7 (8-65)||(10244717-10244774)
chr7 (7-55)||(5579693-5579741)
chr7 (7-55)||(21050235-21050283)
chr7 (8-56)||(27544956-27545004)
chr7 (8-55)||(8615023-8615070)
chr7 (8-55)||(46987086-46987133)
chr7 (7-56)||(7872761-7872810)
chr7 (9-58)||(40762222-40762271)
chr7 (8-56)||(2618678-2618726)
chr7 (8-44)||(12212285-12212321)
chr7 (9-57)||(13044157-13044205)
chr7 (8-52)||(18714451-18714495)
chr7 (9-57)||(21136829-21136877)
chr7 (11-55)||(24991781-24991825)
chr7 (7-55)||(37864425-37864473)
chr7 (11-63)||(39801698-39801750)
[»] scaffold1327 (1 HSPs)
scaffold1327 (7-58)||(553-604)
[»] chr3 (22 HSPs)
chr3 (7-58)||(1149082-1149133)
chr3 (8-58)||(33771687-33771737)
chr3 (9-58)||(16980369-16980418)
chr3 (12-61)||(21967550-21967599)
chr3 (12-61)||(21989986-21990035)
chr3 (10-58)||(51250249-51250297)
chr3 (7-58)||(35191830-35191881)
chr3 (7-66)||(35863826-35863885)
chr3 (8-58)||(10498709-10498759)
chr3 (8-58)||(18870739-18870789)
chr3 (8-58)||(48315038-48315088)
chr3 (11-56)||(8113579-8113624)
chr3 (9-58)||(10926466-10926515)
chr3 (21-58)||(13901148-13901185)
chr3 (9-54)||(52119377-52119422)
chr3 (7-56)||(53207969-53208018)
chr3 (11-55)||(4402105-4402149)
chr3 (7-55)||(21513288-21513336)
chr3 (9-57)||(43777071-43777119)
chr3 (7-55)||(45885490-45885538)
chr3 (8-56)||(46469276-46469324)
chr3 (7-55)||(53996299-53996347)
[»] scaffold0117 (1 HSPs)
scaffold0117 (11-56)||(18292-18337)
[»] scaffold0262 (1 HSPs)
scaffold0262 (7-58)||(15943-15994)
[»] scaffold0118 (1 HSPs)
scaffold0118 (9-58)||(39995-40044)
[»] scaffold0238 (1 HSPs)
scaffold0238 (8-56)||(25388-25436)
[»] scaffold0126 (1 HSPs)
scaffold0126 (8-56)||(34902-34950)


Alignment Details
Target: scaffold0044 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 42347 - 42569
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtactaaatcatatatttaaacaaagttgtcgccgcccaataatccaat 106  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42347 agaccttgcatatattatgcattgtccttcccaactgagctaagctcacaagtactaaatcatatatttaaacaaagttgccgccgcccaataatccaat 42446  T
Q  107 ctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtcttgtacagtg 206  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42447 ctatcttcttacgatgtagaggttgtttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtcttgtacagtg 42546  T
Q  207 gttttggcggtggtttcggaagt 229  Q
    |||||||||||||||||||||||    
T  42547 gttttggcggtggtttcggaagt 42569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 38093760 - 38093629
Alignment:
Q  94 ccaataatccaatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatg 193  Q
    |||||||||||||||||| |||||| ||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38093760 ccaataatccaatctatcttcttaccatgtagaagccgtttatggtggtgcgacgagcggcttaagccctctgcaccacctacctccagatctgccgatg 38093661  T
Q  194 gtcttgtacagtggttttggcggtggtttcgg 225  Q
    ||||||||||||||||||||||||||||||||    
T  38093660 gtcttgtacagtggttttggcggtggtttcgg 38093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 55729202 - 55729117
Alignment:
Q  136 tggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtcttgtacagtggttttggcggtggtt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  55729202 tggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatatgccgatggtcttgtacggtgattttggcggtggtt 55729117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 6410396 - 6410283
Alignment:
Q  108 tatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtcttgtacagtgg 207  Q
    |||| ||||| |||||||| ||| |||||||||||||||||||||||||  |||||||||| |||||||||||| || ||  ||||||| || || | ||    
T  6410396 tatcttcttaagatgtagacgtcgtttatggtggtgcgacgagcggcttgtgccctccgcatcacctacctccaaatatgttgatggtcctgcacggcgg 6410297  T
Q  208 ttttggcggtggtt 221  Q
    ||||||||||||||    
T  6410296 ttttggcggtggtt 6410283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 12485109 - 12485206
Alignment:
Q  99 aatccaatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtc 196  Q
    ||||||||  ||| ||||| ||| | || ||| |||||||||||||||||||| |||| ||||||| |||||||||||||||| || || ||||||||    
T  12485109 aatccaatgaatcttcttaagatttggacgtcgtttatggtggtgcgacgagcagcttgagccctctgcaccacctacctccatatttgtcgatggtc 12485206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 16620616 - 16620675
Alignment:
Q  137 ggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtc 196  Q
    |||||||||||||||||||| |||||||||||||||  |||| || ||||||| ||||||    
T  16620616 ggtggtgcgacgagcggcttcagccctccgcaccactaaccttcaaatctgccaatggtc 16620675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 7230327 - 7230277
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  7230327 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacgag 7230277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 12466354 - 12466424
Alignment:
Q  111 catcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctcca 181  Q
    ||||||| |||||||| ||| |||||||||||| || ||||  ||| ||||||| ||||||||||||||||    
T  12466354 catcttaagatgtagacgtcgtttatggtggtgtgatgagcatcttgagccctctgcaccacctacctcca 12466424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 12468985 - 12469067
Alignment:
Q  99 aatccaatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctcca 181  Q
    ||||||||  ||| ||||| |||||| | ||| ||||||||||||||| ||||  ||| ||||||| ||||||||||||||||    
T  12468985 aatccaatacatcttcttaagatgtaaacgtcgtttatggtggtgcgatgagcatcttgagccctctgcaccacctacctcca 12469067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 4059250 - 4059295
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctc 53  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||    
T  4059250 gaccttgcatatattatacattgtccttcccaactgaggtaagctc 4059295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 30380576 - 30380524
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgagtac 61  Q
    |||||||||||||||||||  |||||| ||||||||| ||| |||||||||||    
T  30380576 accttgcatatattatacattgtccttaccaactgagttaaactcacgagtac 30380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 2186346 - 2186397
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  2186346 agaccttgcatatattatgcattgtccataccaactgagctaagctcacgag 2186397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 52270043 - 52270094
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  52270043 agaccttgcatatattatgcattgtccataccaactgagctaagctcacgag 52270094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 20799408 - 20799458
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  20799408 gaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 20799458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 36203283 - 36203233
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  ||||||  |||||||||||||||||||||    
T  36203283 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacgag 36203233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 37193296 - 37193246
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||||||  |||| | | ||||||||||||||||||||    
T  37193296 gaccttgcatatattatacattgtccatactaactgagctaagctcacgag 37193246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 38453312 - 38453262
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  38453312 gaccttgcatatattatgcattgtccatgccaactgagctaagctcacgag 38453262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 42845072 - 42845022
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||||| ||||||||| ||||||||||||    
T  42845072 gaccttgcatatattatgcattgtcctttccaactgagttaagctcacgag 42845022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 46676512 - 46676558
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctca 54  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  46676512 gaccttgcatatattatgcattgtccttaccaactgagctaagctca 46676558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 49473692 - 49473642
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||||| ||||||| ||||||||||||||    
T  49473692 gaccttgcatatattatgcattgtccttaccaactgggctaagctcacgag 49473642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 50362153 - 50362203
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  50362153 gaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 50362203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 1432903 - 1432862
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaa 49  Q
    ||||||||||||||||||||| || ||| |||||||||||||    
T  1432903 gaccttgcatatattatacactgttcttaccaactgagctaa 1432862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 12322717 - 12322660
Alignment:
Q  11 cttgcatatattatacaccgtccttcccaactgagctaagctcacgagtactaaatca 68  Q
    |||||||||||||| ||  |||| | |||||||||||||||||||||| ||| |||||    
T  12322717 cttgcatatattatgcattgtccgtaccaactgagctaagctcacgaggactcaatca 12322660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 29908103 - 29908054
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacga 57  Q
    ||||||||||||||||| ||  |||||| ||||||||| |||||||||||    
T  29908103 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacga 29908054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 42316838 - 42316891
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtac 61  Q
    ||||||||||||||||| ||| ||| || ||||||||| |||||||||| ||||    
T  42316838 gaccttgcatatattatgcactgtctttaccaactgagttaagctcacgggtac 42316891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 56497621 - 56497670
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||| ||  |||||| |||| |||||||||||||||    
T  56497621 agaccttgcatatattatgcattgtccttaccaattgagctaagctcacg 56497670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 11166734 - 11166678
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtacta 63  Q
    |||||||||||||||||||||  |||||| |||||| || ||| |||||| ||||||    
T  11166734 agaccttgcatatattatacattgtccttaccaactaagataaactcacgggtacta 11166678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 14542773 - 14542821
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||  |||||| |||||| ||||||||||||    
T  14542773 agaccttgcatatattatgcattgtccttgccaactaagctaagctcac 14542821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 12156913 - 12156780
Alignment:
Q  88 cgccgcccaataatccaatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctg 187  Q
    ||||| |||||||||||||| ||| |||||||||||||||| | ||  |||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  12156913 cgccgtccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcggcttaagccttccgcaccacctacctccagatccg 12156814  T
Q  188 ccgatggtcttgtacagtggttttggcggtggtt 221  Q
    ||||||||  | ||| ||||||||||||||||||    
T  12156813 ccgatggttctatacggtggttttggcggtggtt 12156780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 5145081 - 5145131
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacga 57  Q
    ||||||| ||||||||||||||||||||| |||||| || |||||||||||    
T  5145081 agaccttacatatattatacaccgtccttaccaactaagttaagctcacga 5145131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 16133079 - 16133129
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  16133079 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacgag 16133129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 17210724 - 17210773
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  17210724 accttgcatatattatgcactgtccctaccaactgagctaagctcacgag 17210773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 36321509 - 36321558
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  36321509 accttgcatatattatgcattgtccttaccaactgagctaagctcacgag 36321558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 6489055 - 6489004
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  6489055 agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 6489004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 15889459 - 15889408
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  15889459 agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 15889408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 24408543 - 24408492
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| || |||||   ||||||||||||||||||||||    
T  24408543 agaccttgcatatattatgcatcgtccaaaccaactgagctaagctcacgag 24408492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 3445261 - 3445311
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||| ||||| ||  |||||| ||||||||||||||||||||||    
T  3445261 gaccttgcatacattatgcattgtccttaccaactgagctaagctcacgag 3445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 6624823 - 6624773
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  6624823 gaccttgcatatattatgcattgtccatgccaactgagctaagctcacgag 6624773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 13220638 - 13220684
Alignment:
Q  12 ttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||| |||||||| || ||||||| ||||||||||||||||||||||    
T  13220638 ttgcgtatattatgcatcgtccttaccaactgagctaagctcacgag 13220684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 16701595 - 16701645
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  16701595 gaccttgcatatattattcattgtccctaccaactgagctaagctcacgag 16701645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 33645703 - 33645753
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||||||  |||| | ||||||||| ||||||||||||    
T  33645703 gaccttgcatatattatacattgtccataccaactgagttaagctcacgag 33645753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 37932377 - 37932327
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  37932377 gaccttgcatatattatgcattgtccataccaactgagctaagctcacgag 37932327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 2591045 - 2591089
Alignment:
Q  11 cttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||| ||| || ||| |||||||||||||||||||    
T  2591045 cttgcatatattatgcactgttcttgccaactgagctaagctcac 2591089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 8902794 - 8902838
Alignment:
Q  12 ttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||  |||| | ||||||||||||||||||||    
T  8902794 ttgcatatattatacattgtccataccaactgagctaagctcacg 8902838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 22498990 - 22498942
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||  |||||| ||||||||| |||||||||    
T  22498990 agaccttgcatatattatgcattgtccttaccaactgagttaagctcac 22498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 34436896 - 34436848
Alignment:
Q  10 ccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  34436896 ccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 34436848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 38530913 - 38531025
Alignment:
Q  90 ccgcccaataatccaatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgcc 189  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |    
T  38530913 ccgcccaataattcaatctatcttcttaagatgtagaggtcgtttatggtggtgcgacgagcggcttgagccctccgcaccacctacttccagatatgtc 38531012  T
Q  190 gatggtcttgtac 202  Q
    ||||||| |||||    
T  38531013 gatggtcctgtac 38531025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 14950045 - 14950144
Alignment:
Q  88 cgccgcccaataatccaatctatcatcttacgatgtagaggtcatttat-ggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatct 186  Q
    ||||| |||||||| ||||| ||| ||||| |||||||||| || |||| ||||||||||| ||||| ||||||| || |||||||||||||||||||||    
T  14950045 cgccgtccaataattcaatcaatcttcttaagatgtagagg-cagttattggtggtgcgacaagcggattaagccatc-gcaccacctacctccagatct 14950142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 10735845 - 10735904
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtactaaatc 67  Q
    ||||||||||||||||| || ||||| | |||||||||||||||||||||| ||| ||||    
T  10735845 gaccttgcatatattatgcatcgtccctaccaactgagctaagctcacgaggacttaatc 10735904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 19179063 - 19179112
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  19179063 agaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 19179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 36013942 - 36013991
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||| |||||||||||||||| ||||||| |||| |||||||||||||||    
T  36013942 agacgttgcatatattatacatcgtccttaccaattgagctaagctcacg 36013991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 24593423 - 24593375
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  24593423 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 24593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 18231488 - 18231535
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  18231488 accttgcatatattatgcattgtccttaccaactgagctaagctcacg 18231535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 34903565 - 34903518
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctca 54  Q
    |||||||||||||||||| ||| |||||| |||||||| |||||||||    
T  34903565 agaccttgcatatattatgcactgtccttaccaactgaactaagctca 34903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 35372952 - 35373003
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||||| |  |||||| |||||||||||| |||||||||    
T  35372952 agaccttgcatatattatatattgtccttaccaactgagctatgctcacgag 35373003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 40032881 - 40032932
Alignment:
Q  8 gaccttgcatatatta-tacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| | ||| |||||| ||||||||||||||||||||||    
T  40032881 gaccttgcatatattaatgcactgtccttaccaactgagctaagctcacgag 40032932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 43117203 - 43117254
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||||| ||||||||||||| ||||||||    
T  43117203 agaccttgcatatattatgcattgtccttaccaactgagctaaactcacgag 43117254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 9383224 - 9383278
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgagtacta 63  Q
    |||||||||||||||| ||  |||| | |||||||||||||||||||||| ||||    
T  9383224 accttgcatatattatgcattgtccataccaactgagctaagctcacgaggacta 9383278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 20120736 - 20120782
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||| ||  |||||| |||||||||||||||||||    
T  20120736 accttgcatatattatgcattgtccttaccaactgagctaagctcac 20120782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 20565089 - 20565139
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  20565089 gaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 20565139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 21482533 - 21482583
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||||||   ||||| ||||||||||||| ||||||||    
T  21482533 gaccttgcatatattatacattatccttaccaactgagctaaactcacgag 21482583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 40099397 - 40099443
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctca 54  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  40099397 gaccttgcatatattatgcattgtccttaccaactgagctaagctca 40099443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24393293 - 24393244
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||| ||  ||||||  |||||||||||||||||||    
T  24393293 agaccttgcatatattatgcattgtccttaacaactgagctaagctcacg 24393244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 7413203 - 7413251
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||| ||||||||| ||  |||||| ||||||||||||||||||||    
T  7413203 gaccttgtatatattatgcattgtccttaccaactgagctaagctcacg 7413251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 12124592 - 12124544
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| ||||||||||||| ||||||    
T  12124592 gaccttgcatatattatgcattgtccttaccaactgagctaaactcacg 12124544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 12124731 - 12124687
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagct 52  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||    
T  12124731 gaccttgcatatattatgcattgtccttaccaactgagctaagct 12124687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 19156179 - 19156227
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacga 57  Q
    ||||||||||||||||  || |||||| |||| ||||||||||||||||    
T  19156179 accttgcatatattatgtactgtccttaccaattgagctaagctcacga 19156227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 35820315 - 35820371
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtactaa 64  Q
    |||||||||| |||||| ||  |||| | |||||||||||||||||||||| |||||    
T  35820315 gaccttgcatgtattatgcattgtccctaccaactgagctaagctcacgaggactaa 35820371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 30845940 - 30845832
Alignment:
Q  113 tcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtcttgtacagtggttttg 212  Q
    ||||| |||||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  30845940 tcttaagatgtagaggccgtttatggtggtgcgacgagcggcttgaaccctccgcaccacctacctccagatttgccgatggtcctgtacaacggttttg 30845841  T
Q  213 gcggtggtt 221  Q
    | |||||||    
T  30845840 gtggtggtt 30845832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 1514177 - 1514225
Alignment:
Q  10 ccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||||  |||||  ||||||||||||||||||||||    
T  1514177 ccttgcatatattatacattgtcctaaccaactgagctaagctcacgag 1514225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 17382129 - 17382081
Alignment:
Q  10 ccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||||  |||| | ||||||||||||||||||||||    
T  17382129 ccttgcatatattatacattgtccataccaactgagctaagctcacgag 17382081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 20744186 - 20744135
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  20744186 agaccttgcatatattatgcattgtccataccaactgagctaagctcacgag 20744135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 18256930 - 18256880
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  ||||||  |||||||||||||||||||||    
T  18256930 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacgag 18256880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 28757039 - 28757085
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||||  |||||| ||||||||| |||||||||    
T  28757039 accttgcatatattatacattgtccttaccaactgagttaagctcac 28757085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 788912 - 788863
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| ||  |||||| ||||||||| ||||||||||||    
T  788912 accttgcatatattatgcattgtccttaccaactgagataagctcacgag 788863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 17829326 - 17829375
Alignment:
Q  12 ttgcatatattatacaccgtccttcccaactgagctaagctcacgagtac 61  Q
    ||||||||||||| ||  |||||| |||||||||||||||||||| ||||    
T  17829326 ttgcatatattatgcatagtccttaccaactgagctaagctcacgggtac 17829375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 32053834 - 32053785
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  32053834 accttgcatatattatgcattgtccataccaactgagctaagctcacgag 32053785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 10780123 - 10780171
Alignment:
Q  10 ccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  10780123 ccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 10780171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 14350664 - 14350786
Alignment:
Q  94 ccaataatccaatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatg 193  Q
    |||||||||||||| ||| ||||| |||||||||| | ||  ||||| |||||||| ||||||||||| |||||||||||||||| |||||| |||||||    
T  14350664 ccaataatccaatcaatcttcttatgatgtagaggccgttattggtgatgcgacgatcggcttaagcc-tccgcaccacctaccttcagatccgccgatg 14350762  T
Q  194 gtcttgtacagtggttttggcggt 217  Q
    ||| ||||| ||||||||||||||    
T  14350763 gtcctgtacggtggttttggcggt 14350786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 32059070 - 32058962
Alignment:
Q  88 cgccgcccaataatccaatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctg 187  Q
    |||||||||| ||| |||| |||  ||||  |||||||||  | |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  32059070 cgccgcccaaaaattcaatatatattcttgagatgtagagtccgtttatggtggtgcgaccagcggcttgagccctccgcaccacctacctccagatctg 32058971  T
Q  188 ccgatggtc 196  Q
     ||||||||    
T  32058970 tcgatggtc 32058962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 5907846 - 5907798
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  5907846 gaccttgcatatattatgcattgtccttgccaactgagctaagctcacg 5907798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 17283998 - 17283950
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  17283998 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 17283950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 34733444 - 34733396
Alignment:
Q  11 cttgcatatattatacaccgtccttcccaactgagctaagctcacgagt 59  Q
    |||||||||||||| ||  |||||| |||||||||||||||||||||||    
T  34733444 cttgcatatattatgcattgtccttaccaactgagctaagctcacgagt 34733396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 38448880 - 38448928
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  38448880 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 38448928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 21400036 - 21400087
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  21400036 agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 21400087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 42045385 - 42045436
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  42045385 agaccttgcatatattatgcattgtccataccaactgagctaagctcacgag 42045436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 37098495 - 37098545
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  37098495 gaccttgcatatattattcattgtccctaccaactgagctaagctcacgag 37098545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 44507944 - 44507990
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctca 54  Q
    ||||||||||||||||||||  |||||  ||||||||||||||||||    
T  44507944 gaccttgcatatattatacattgtcctaaccaactgagctaagctca 44507990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 49875613 - 49875663
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||||| ||||||||| ||||||||||||    
T  49875613 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacgag 49875663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 15803251 - 15803299
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| |||||||| |||||||||||    
T  15803251 gaccttgcatatattatgcattgtccttgccaactgaactaagctcacg 15803299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 19620623 - 19620575
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||  |  |||||| ||||||||||||||||||||    
T  19620623 gaccttgcatatattatgtattgtccttaccaactgagctaagctcacg 19620575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 25533020 - 25532964
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtactaa 64  Q
    ||||||||||||||||| ||  |||| | |||||||| ||||||||||||| |||||    
T  25533020 gaccttgcatatattatgcattgtccataccaactgaactaagctcacgaggactaa 25532964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 28039873 - 28039921
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||  |||||| ||||||||| |||||||||    
T  28039873 agaccttgcatatattatgcattgtccttaccaactgagttaagctcac 28039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 45140020 - 45140068
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||    
T  45140020 gaccttgcatatattatgcattgtccataccaactgagctaagctcacg 45140068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 47528461 - 47528509
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||| |||||||| ||  |||||| ||||||||||||||||||||    
T  47528461 gaccttgcgtatattatgcattgtccttaccaactgagctaagctcacg 47528509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 50638930 - 50638974
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagct 52  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||    
T  50638930 gaccttgcatatattatgcattgtccttaccaactgagctaagct 50638974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 35368 - 35271
Alignment:
Q  99 aatccaatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtc 196  Q
    ||||||||  ||| ||||| ||| | || ||| |||||||||||||||||||| |||| ||||||| |||||||||||||||| || || ||||||||    
T  35368 aatccaatgaatcttcttaagatttggacgtcgtttatggtggtgcgacgagcagcttgagccctctgcaccacctacctccatatttgtcgatggtc 35271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 27750918 - 27750968
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  27750918 gaccttgcatatattatgcactgtccttaccaactgagctaagctcacgag 27750968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 6444444 - 6444352
Alignment:
Q  104 aatctatcatcttacgatgtagaggtcatttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtc 196  Q
    ||||||||  |||| ||| |||| ||| |||||||||||| ||||||||||||  | |||||||| || |||||||||||||||  |||||||    
T  6444444 aatctatctccttaagatctagatgtcgtttatggtggtgtgacgagcggcttgtgtcctccgcatcagctacctccagatctgtggatggtc 6444352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 17704061 - 17704010
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  17704061 agaccttgcatatattatgcattgtccttaccaactgagctaagctcacgag 17704010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 19778112 - 19778064
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  19778112 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 19778064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 30623341 - 30623293
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||  |||||| |||||||||||||||||||    
T  30623341 agaccttgcatatattatgcattgtccttaccaactgagctaagctcac 30623293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 14902053 - 14902010
Alignment:
Q  13 tgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||    
T  14902053 tgcatatattatacatcgtccttaccaactgagttaagctcacg 14902010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 39821932 - 39821881
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  39821932 agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 39821881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 41188855 - 41188902
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||||  |||||| |||||||| |||||||||||    
T  41188855 accttgcatatattatacaatgtccttaccaactgaactaagctcacg 41188902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 11709033 - 11708983
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  11709033 gaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 11708983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 27587268 - 27587218
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||| || ||  |||||| ||||||||||||||||||||||    
T  27587268 gaccttgcatatatcatgcattgtccttaccaactgagctaagctcacgag 27587218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 16081352 - 16081304
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacga 57  Q
    ||||||||| |||||||||  ||||||  ||||||||||||||||||||    
T  16081352 accttgcatgtattatacattgtccttagcaactgagctaagctcacga 16081304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 31888073 - 31888025
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| |||||||||||||| |||||    
T  31888073 gaccttgcatatattatccattgtccttaccaactgagctaagttcacg 31888025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 56831 - 56770
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtactaaatcat 69  Q
    ||||||||||||||||||||  |||| | |||||||||||||||||||||| || |||||||    
T  56831 gaccttgcatatattatacattgtccataccaactgagctaagctcacgaggacaaaatcat 56770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 53791 - 53839
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||| |||||| ||| |||||| ||||||||||||| ||||||    
T  53791 gaccttgcatgtattatgcactgtccttaccaactgagctaaactcacg 53839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 30296381 - 30296333
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||||||  |||||| |||||||||||||||||||    
T  30296381 agaccttgcatatattatacattgtccttaccaactgagctaagctcac 30296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 41029319 - 41029271
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  41029319 gaccttgcatatattatacattgtccttaccaactgagctaagctcacg 41029271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 25888947 - 25888900
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    ||||||||||||||||| || ||||||| |||||||||||||||||||    
T  25888947 gaccttgcatatattatgcatcgtccttaccaactgagctaagctcac 25888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 32566056 - 32566103
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||||| ||| || ||||||||||||||||||||    
T  32566056 accttgcatatattatacactgtctttaccaactgagctaagctcacg 32566103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 10244774 - 10244717
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtactaaa 65  Q
    ||||||||||||||||| ||  |||| | |||||||||||||||||||||| ||||||    
T  10244774 gaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggactaaa 10244717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 5579741 - 5579693
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||| |||| | |||||||||||||||||||    
T  5579741 agaccttgcatatattatgcactgtccctaccaactgagctaagctcac 5579693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 21050235 - 21050283
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||  |||||| |||||||||||||||||||    
T  21050235 agaccttgcatatattatgcattgtccttaccaactgagctaagctcac 21050283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 27545004 - 27544956
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||||||    
T  27545004 gaccttgcatatattatacattgtccttaccaactgagataagctcacg 27544956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 8615070 - 8615023
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    ||||||||||||||||| ||  |||||| |||||||||||||||||||    
T  8615070 gaccttgcatatattatgcattgtccttaccaactgagctaagctcac 8615023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 46987133 - 46987086
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    ||||||||||||||||| ||  |||||| |||||||||||||||||||    
T  46987133 gaccttgcatatattatgcattgtccttaccaactgagctaagctcac 46987086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 7872761 - 7872810
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||| ||  |||||| |||||||||||||| |||||    
T  7872761 agaccttgcatatattatgcattgtccttaccaactgagctaagttcacg 7872810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 40762222 - 40762271
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| ||  |||||| ||| ||||||||||||||||||    
T  40762222 accttgcatatattatgcattgtccttaccatctgagctaagctcacgag 40762271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 2618726 - 2618678
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| |||||||||| |||||||||    
T  2618726 gaccttgcatatattatgcattgtccttaccaactgagcgaagctcacg 2618678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 12212321 - 12212285
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactga 44  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  12212321 gaccttgcatatattatacatcgtccttaccaactga 12212285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 13044157 - 13044205
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacga 57  Q
    ||||||||||| |||| ||  |||||| |||||||||||||||||||||    
T  13044157 accttgcatattttatgcattgtccttaccaactgagctaagctcacga 13044205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 18714495 - 18714451
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagct 52  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||    
T  18714495 gaccttgcatatattatgcattgtccttaccaactgagctaagct 18714451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 21136877 - 21136829
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacga 57  Q
    |||||||||||||||||||  |||| | ||||||||| |||||||||||    
T  21136877 accttgcatatattatacattgtccataccaactgagttaagctcacga 21136829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 24991825 - 24991781
Alignment:
Q  11 cttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||| ||  |||||| |||||||||||||||||||    
T  24991825 cttgcatatattatgcattgtccttaccaactgagctaagctcac 24991781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 37864473 - 37864425
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||  || ||| |||||||||||||||||||    
T  37864473 agaccttgcatatattatgcattgtacttaccaactgagctaagctcac 37864425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 39801750 - 39801698
Alignment:
Q  11 cttgcatatattatacaccgtccttcccaactgagctaagctcacgagtacta 63  Q
    |||||||||||||| ||  |||| | |||||||||||||||||||||| ||||    
T  39801750 cttgcatatattatgcattgtccataccaactgagctaagctcacgaggacta 39801698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 604 - 553
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||| |||||||||||||| ||||||  |||||||||||||||||||||    
T  604 agaccttacatatattatacactgtccttatcaactgagctaagctcacgag 553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 1149082 - 1149133
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  1149082 agaccttgcatatattatgcattgtccttaccaactgagctaagctcacgag 1149133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 33771737 - 33771687
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  33771737 gaccttgcatatattatacattgtccttaccaactgagttaagctcacgag 33771687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 16980369 - 16980418
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  16980369 accttgcatatattatgcattgtccttaccaactgagctaagctcacgag 16980418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 21967599 - 21967550
Alignment:
Q  12 ttgcatatattatacaccgtccttcccaactgagctaagctcacgagtac 61  Q
    ||||||||||||||||  |||||| ||||||||| |||||||||||||||    
T  21967599 ttgcatatattatacattgtccttaccaactgagttaagctcacgagtac 21967550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 21990035 - 21989986
Alignment:
Q  12 ttgcatatattatacaccgtccttcccaactgagctaagctcacgagtac 61  Q
    ||||||||||||||||  |||||| ||||||||| |||||||||||||||    
T  21990035 ttgcatatattatacattgtccttaccaactgagttaagctcacgagtac 21989986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 51250249 - 51250297
Alignment:
Q  10 ccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  51250249 ccttgcatatattatacattgtccttaccaactgagttaagctcacgag 51250297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 35191830 - 35191881
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||| ||  |||||| ||||||||||||||| ||||||    
T  35191830 agaccttgcatatattatgcattgtccttaccaactgagctaagcgcacgag 35191881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 35863826 - 35863885
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgagtactaaat 66  Q
    ||||||||||||||||||  |  |||||| |||||||||||||||| ||||| |||||||    
T  35863826 agaccttgcatatattatgtattgtccttaccaactgagctaagcttacgaggactaaat 35863885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 10498709 - 10498759
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  10498709 gaccttgcatatattatgcattgtccataccaactgagctaagctcacgag 10498759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 18870739 - 18870789
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  18870739 gaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 18870789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 48315038 - 48315088
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    ||||||||||||||||| ||   ||||| ||||||||||||||||||||||    
T  48315038 gaccttgcatatattatgcattatccttaccaactgagctaagctcacgag 48315088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 8113579 - 8113624
Alignment:
Q  11 cttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||| ||  |||||| ||||||||||||||||||||    
T  8113579 cttgcatatattatgcattgtccttaccaactgagctaagctcacg 8113624  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 10926515 - 10926466
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| ||  |||||| |||||||||||||||| |||||    
T  10926515 accttgcatatattatgcattgtccttaccaactgagctaagcttacgag 10926466  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 13901148 - 13901185
Alignment:
Q  21 ttatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  13901148 ttatgcaccgtccttaccaactgagctaagctcacgag 13901185  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 52119422 - 52119377
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctca 54  Q
    |||||||||||||||| ||  |||||| ||||||||||||||||||    
T  52119422 accttgcatatattatgcattgtccttaccaactgagctaagctca 52119377  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 53208018 - 53207969
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||| ||  | |||| ||||||||||||||||||||    
T  53208018 agaccttgcatatattatgcattgcccttaccaactgagctaagctcacg 53207969  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 4402149 - 4402105
Alignment:
Q  11 cttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||| ||  |||||| |||||||||||||||||||    
T  4402149 cttgcatatattatccattgtccttaccaactgagctaagctcac 4402105  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 21513336 - 21513288
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||| ||||| ||  |||||| |||||||||||||||||||    
T  21513336 agaccttgcataaattatgcattgtccttaccaactgagctaagctcac 21513288  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 43777071 - 43777119
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacga 57  Q
    |||||||||||||||| ||  |||| | |||||||||||||||||||||    
T  43777071 accttgcatatattatgcatggtccctaccaactgagctaagctcacga 43777119  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 45885490 - 45885538
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||  |||| | |||||||||||||||||||    
T  45885490 agaccttgcatatattatgcaaggtccataccaactgagctaagctcac 45885538  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 46469324 - 46469276
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||| ||||||||| ||  |||||| ||||||||||||||||||||    
T  46469324 gaccttgaatatattatgcattgtccttaccaactgagctaagctcacg 46469276  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 53996347 - 53996299
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcac 55  Q
    |||||||||||||||||| ||  |||| | |||||||||||||||||||    
T  53996347 agaccttgcatatattatgcattgtccataccaactgagctaagctcac 53996299  T

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Target: scaffold0117 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 18337 - 18292
Alignment:
Q  11 cttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||    
T  18337 cttgcatatattatacattgtccttaccaactgagctaagctcacg 18292  T

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Target: scaffold0262 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 15943 - 15994
Alignment:
Q  7 agaccttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||||||||  |||||| |||| |||| ||||||||||||    
T  15943 agaccttgcatatattatacattgtccttaccaattgagttaagctcacgag 15994  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 40044 - 39995
Alignment:
Q  9 accttgcatatattatacaccgtccttcccaactgagctaagctcacgag 58  Q
    |||||||||||||||| ||  |||| | ||||||||||||||||||||||    
T  40044 accttgcatatattatgcattgtccataccaactgagctaagctcacgag 39995  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 25436 - 25388
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| ||||||||| ||||||||||    
T  25436 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 25388  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 34902 - 34950
Alignment:
Q  8 gaccttgcatatattatacaccgtccttcccaactgagctaagctcacg 56  Q
    ||||||||||||||||| ||  |||||| ||||||||| ||||||||||    
T  34902 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 34950  T

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