View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11605_high_12 (Length: 209)
Name: NF11605_high_12
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11605_high_12 |
 | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 24036949 - 24036778
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
24036949 |
ggttgaagaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt |
24036850 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
24036849 |
agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
24036778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 16564877 - 16565048
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
16564877 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt |
16564976 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
||||||||| ||| || ||||||| ||||||||| || | |||||||||||||||||| |||||||| |
|
|
| T |
16564977 |
agacatttttatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg |
16565048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 15618184 - 15618353
Alignment:
| Q |
29 |
gttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagta |
128 |
Q |
| |
|
||||| |||||||||||||||||||| || | ||| ||||| || || | || |||||||||||||||||| ||| |||| |||||||||| |||||||| |
|
|
| T |
15618184 |
gttgaagaaatggttgcaatgtttttggtcgttgtaggccatggtgtcgatagtagaatgattcaagaaagatttcaacattcgggtgagactgtaagta |
15618283 |
T |
|
| Q |
129 |
gacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctat |
198 |
Q |
| |
|
|||||| |||| || ||||||| |||| |||| || | |||||||||||||||||| ||||||| |
|
|
| T |
15618284 |
cacatttccatcgtgtacttcatgcatgccttgagttatccttcaaatatattaaacccgaagatcctat |
15618353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 22698091 - 22698192
Alignment:
| Q |
38 |
atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc |
137 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || || || |||||||||||||||||||||||||| |||||| || || | ||| ||||||| ||||| |
|
|
| T |
22698091 |
atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttc |
22698190 |
T |
|
| Q |
138 |
at |
139 |
Q |
| |
|
|| |
|
|
| T |
22698191 |
at |
22698192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 22982439 - 22982338
Alignment:
| Q |
38 |
atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc |
137 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || || || |||||||||||||||||||||||||| |||||| || || | ||| ||||||| ||||| |
|
|
| T |
22982439 |
atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttc |
22982340 |
T |
|
| Q |
138 |
at |
139 |
Q |
| |
|
|| |
|
|
| T |
22982339 |
at |
22982338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 22996026 - 22995925
Alignment:
| Q |
38 |
atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc |
137 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || || || |||||||||||||||||||||||||| |||||| || || | ||| ||||||| ||||| |
|
|
| T |
22996026 |
atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttc |
22995927 |
T |
|
| Q |
138 |
at |
139 |
Q |
| |
|
|| |
|
|
| T |
22995926 |
at |
22995925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 192735 - 192906
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
192735 |
ggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt |
192834 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
192835 |
agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
192906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 720339 - 720510
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
720339 |
ggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt |
720438 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
720439 |
agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
720510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 881446 - 881617
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
881446 |
ggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt |
881545 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
881546 |
agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
881617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 19647551 - 19647652
Alignment:
| Q |
38 |
atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc |
137 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || || || |||||||||||||||||||||||||| ||||||| || || | ||| ||||||| ||||| |
|
|
| T |
19647551 |
atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc |
19647650 |
T |
|
| Q |
138 |
at |
139 |
Q |
| |
|
|| |
|
|
| T |
19647651 |
at |
19647652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 51126118 - 51125947
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
51126118 |
ggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt |
51126019 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
51126018 |
agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
51125947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 16247529 - 16247359
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| | ||| |||||| |||||||||||||| |||||||||| ||| |||| |||||| ||| | ||||| |
|
|
| T |
16247529 |
ggttgaagaaattgttgcaatgtttttagtcgttgtaagccacgatgtaggtaatagaataattcaagaaatatttcaacattcgggttagactataagt |
16247430 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| || | |||||||||||||| ||| |||||||| |
|
|
| T |
16247429 |
agacattttcatc-ggtacttcatgcatgccttaagttgtccttcaaatatattaaacctgaagatcctatg |
16247359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 7011012 - 7011113
Alignment:
| Q |
38 |
atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc |
137 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || || || ||||||| |||||||||||||||||| ||||||| || || | ||| ||||||| ||||| |
|
|
| T |
7011012 |
atggttgcaatgttcttacttgttgttggacatggagtgggtaataaaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc |
7011111 |
T |
|
| Q |
138 |
at |
139 |
Q |
| |
|
|| |
|
|
| T |
7011112 |
at |
7011113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 14035976 - 14036145
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
14035976 |
ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt |
14036075 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatccta |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
14036076 |
agacattttcatcaagtgcttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
14036145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 13895349 - 13895518
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
13895349 |
ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagt |
13895448 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatccta |
197 |
Q |
| |
|
||| ||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
13895449 |
agatattttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
13895518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 5917694 - 5917523
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
5917694 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt |
5917595 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| || | |||||||||||||||||| |||||||| |
|
|
| T |
5917594 |
agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg |
5917523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 36310931 - 36311102
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
36310931 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt |
36311030 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| || | |||||||||||||||||| |||||||| |
|
|
| T |
36311031 |
agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg |
36311102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 23361701 - 23361600
Alignment:
| Q |
38 |
atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc |
137 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || || || |||||||||||||||||||||||||| ||||||| || || | ||| ||||||| ||||| |
|
|
| T |
23361701 |
atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc |
23361602 |
T |
|
| Q |
138 |
at |
139 |
Q |
| |
|
|| |
|
|
| T |
23361601 |
at |
23361600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 33231806 - 33231975
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
33231806 |
ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagt |
33231905 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatccta |
197 |
Q |
| |
|
||| ||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
33231906 |
agatattttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
33231975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 22480849 - 22481020
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
22480849 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt |
22480948 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| || | |||||||||||||||||| |||||||| |
|
|
| T |
22480949 |
agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg |
22481020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 16841185 - 16841292
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| | | ||| || || || ||||||||||||||||||||| |||| ||| |||||| | |||||| ||||||| |
|
|
| T |
16841185 |
ggttgaagaaatggttgcaatgttttttatcgttgtaggtcatggtgtaggtaatagaatgattcaataaagatttcaacacttgagtgagactgtaagt |
16841284 |
T |
|
| Q |
128 |
agacattt |
135 |
Q |
| |
|
|| ||||| |
|
|
| T |
16841285 |
agtcattt |
16841292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 22809358 - 22809458
Alignment:
| Q |
38 |
atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc |
137 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || || || |||||||||||||||||||||||||| ||||||| || || | ||| ||||||| ||||| |
|
|
| T |
22809358 |
atggttgcaatgttcttacttgttgttggaca-ggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc |
22809456 |
T |
|
| Q |
138 |
at |
139 |
Q |
| |
|
|| |
|
|
| T |
22809457 |
at |
22809458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 46406837 - 46407006
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| |
|
|
| T |
46406837 |
ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgagtgagactgttagt |
46406936 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatccta |
197 |
Q |
| |
|
||| |||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
46406937 |
agatgttttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
46407006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 35570656 - 35570485
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
35570656 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt |
35570557 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| || | |||||||||||||||||| |||||||| |
|
|
| T |
35570556 |
agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg |
35570485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 4345347 - 4345448
Alignment:
| Q |
38 |
atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc |
137 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || || || |||||||||||||||||||||||||| ||||||| || || | ||| ||||||| ||||| |
|
|
| T |
4345347 |
atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc |
4345446 |
T |
|
| Q |
138 |
at |
139 |
Q |
| |
|
|| |
|
|
| T |
4345447 |
at |
4345448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 16546790 - 16546961
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
16546790 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt |
16546889 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| || | |||||||||||||||||| |||||||| |
|
|
| T |
16546890 |
agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg |
16546961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 17831510 - 17831339
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||| || ||||||||||||||||||||||| ||| |||| | |||||||| ||||||| |
|
|
| T |
17831510 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacaatgtcggtaatagaatgattcaagaaagatttcaacattagggtgagactgtaagt |
17831411 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
|||||||| |||| || ||||||| ||||||||| || | |||||||||||||||||| |||||||| |
|
|
| T |
17831410 |
agacatttacatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg |
17831339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 37638041 - 37638212
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
37638041 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt |
37638140 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
||||||||||||| || ||||||| |||||| || || | |||||||||||||||||| |||||||| |
|
|
| T |
37638141 |
agacattttcatcgtgtacttcatgcatgccttaaattgtccttcaaatatattaaacccgaagatcctatg |
37638212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 9483 - 9312
Alignment:
| Q |
28 |
ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || | ||| |||||| | || ||||||||||||||||||||||| ||| |||| | |||||||| ||||||| |
|
|
| T |
9483 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacagtgtcggtaatagaatgattcaagaaagatttcaacatttgggtgagactgtaagt |
9384 |
T |
|
| Q |
128 |
agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg |
199 |
Q |
| |
|
|||||||| |||| || ||||||| ||||||||| || | ||||||||||||||| || |||||||| |
|
|
| T |
9383 |
agacatttccatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccaaagatcctatg |
9312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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