View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11605_high_3 (Length: 441)
Name: NF11605_high_3
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11605_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 43962464 - 43962666
Alignment:
| Q |
20 |
ctaatgtatgcatctgctgcatgaatggagtatactttttcttgtcgagaaaaggaatattcctcctgtactagtacttaactccgctttccttgttcaa |
119 |
Q |
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| T |
43962464 |
ctaatgtatgcatctgctgcatgaatggagtatactttttcttgtcgagaaaaggaatattcctcctgtactagtacttaactccgctttccttgttcaa |
43962563 |
T |
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| Q |
120 |
ccggaaaatacacataacttcattatcattcaaattccacattctatgttctgtcttctgaatagttgcaggaatttatctattctcaacatgttgtcta |
219 |
Q |
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| T |
43962564 |
ccggaaaatacacataacttcattatcattcaaattccacattctatgttctgtcttctgaatagttgcaggaatttatctattctcaacatgttgtcta |
43962663 |
T |
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| Q |
220 |
tgc |
222 |
Q |
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| T |
43962664 |
tgc |
43962666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 248 - 435
Target Start/End: Original strand, 43962690 - 43962877
Alignment:
| Q |
248 |
gggttaaatttttatcacgcattgtgaatctgacggaatgattttgggcaatccttatgatggaccggcttcctcatgttcctcgaacctcctaaggcct |
347 |
Q |
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| T |
43962690 |
gggttaaatttttatcacgcattgtgaatctgacggaatgatttttggcaatccttatgatggaccggcttcatcatgttcctcgaacctcctaaggcct |
43962789 |
T |
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| Q |
348 |
tagcaaaacaattgtttaaagaagctgaataataatattcatggtgtgcagatgaatggtggaaatcttcatcgtttgtctctgcttc |
435 |
Q |
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| T |
43962790 |
tagcaaaacaattgtttaaagaagctgaataataatattcatggtgtgcagatgaatggtggaaatcttcatcgtttgtctttgcttc |
43962877 |
T |
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