View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11605_high_9 (Length: 299)
Name: NF11605_high_9
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11605_high_9 |
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| [»] scaffold0007 (3 HSPs) |
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| [»] scaffold0669 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 11100 - 11184
Alignment:
| Q |
206 |
aacacaagagagttgtttaatgttggagaaggatcaacaagcaagcttgtctccaagctttcatagccctccaatggattcatct |
290 |
Q |
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| T |
11100 |
aacaaaagagagttgtttaatgttggagaaggatcaacaagcaagcttgtctccaagctttcatagccctccattggattcatct |
11184 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 10864 - 10940
Alignment:
| Q |
20 |
cttatgaacttacaatttattccactaacttctagcttactttttattcattatttcatgtagtgtttgaatgtata |
96 |
Q |
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| T |
10864 |
cttatgaacttccaatttattccactagcttctagcttactttttattcattatttcatgtagtgtttgaatgtata |
10940 |
T |
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Target: scaffold0007; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 11027 - 11071
Alignment:
| Q |
172 |
ctacatagattcatagtcatatacatccaatccaaacacaagaga |
216 |
Q |
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| T |
11027 |
ctacatagattcatagtgatatacatccaatccaaacacaagaga |
11071 |
T |
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Target: scaffold0669 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0669
Description:
Target: scaffold0669; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 4981 - 5034
Alignment:
| Q |
224 |
aatgttggagaaggatcaacaagcaagcttgtctccaagctttcatagccctccaatg |
281 |
Q |
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| T |
4981 |
aatgttggagaagcatcaacaag----cttgtctccaagctttcctagccctccaatg |
5034 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 18476448 - 18476483
Alignment:
| Q |
247 |
caagcttgtctccaagctttcatagccctccaatgg |
282 |
Q |
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| T |
18476448 |
caagcttgtctccaagctttaatagccctccaatgg |
18476483 |
T |
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