View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11605_low_12 (Length: 239)
Name: NF11605_low_12
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11605_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 41816300 - 41816077
Alignment:
| Q |
2 |
tttattctttgtttccattatggtcgatttgaattttttctgtattgagttcgattgatttataatcggtttgtttgattccattcattcacttcgatgt |
101 |
Q |
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| T |
41816300 |
tttattctttgtttccattatggtcgatttgaattttttctgtattgagttcgattgatttataatcggtttgtttgattccattcattcacttcgatgt |
41816201 |
T |
|
| Q |
102 |
taagttttcatttttctgatgatttataatccatttacgttgatgattttcaaagcttttgctttgaatcagtgaagtaaacaataggtgttaaacaaaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41816200 |
taagttttcatttttctgatgatttataatccatttacgttgatgattttcaaagcttttgctttgaatcagtgaagtaaacaataggtgttaaacaaaa |
41816101 |
T |
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| Q |
202 |
tagggagagaaagcaacctactga |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
41816100 |
tagggagagaaagcaacctactga |
41816077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 45367310 - 45367342
Alignment:
| Q |
189 |
gtgttaaacaaaatagggagagaaagcaaccta |
221 |
Q |
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| T |
45367310 |
gtgttaaacaaaatagggagagaaagcaaccta |
45367342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 432208 - 432236
Alignment:
| Q |
193 |
taaacaaaatagggagagaaagcaaccta |
221 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
432208 |
taaacaaaatagggagagaaagcaaccta |
432236 |
T |
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