View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11605_low_14 (Length: 228)
Name: NF11605_low_14
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11605_low_14 |
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| [»] scaffold0044 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 42826 - 42601
Alignment:
| Q |
7 |
aacagcatcatagaaaccaccgcgaaccaccacaacccaacacaacaaaata-----tccatcaaaaccatatcagatcaccacgtgaccgatccatcac |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42826 |
aacagcatcatagaaaccaccgcgaaccaccacaacccaacacaacaaaacaaaacatccatcaaaaccatatcagatcaccacgtgaccgatccatcac |
42727 |
T |
|
| Q |
102 |
tacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacgatataccaaaaagacaaacacaagtcatcg |
201 |
Q |
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|||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42726 |
taccca-gttgggagcaaactaaacctacatccacggccaagaaagaaaacggatctgatatcaaccacgatataccaaaaagacaaacacaagtcatcg |
42628 |
T |
|
| Q |
202 |
ctgttgaacggtcggagaaccatactc |
228 |
Q |
| |
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|||||||| || ||||||||||||||| |
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| T |
42627 |
ctgttgaatggccggagaaccatactc |
42601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 38093381 - 38093594
Alignment:
| Q |
15 |
catagaaaccaccgcgaaccaccacaacccaacacaacaaaatatccatcaaaaccatatcagatcaccacgtgaccgatccatcactacccatgttggg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |
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| T |
38093381 |
catagaaaccaccgcgaaccaccacaacccaacacaacgaaaaatccatcaaaaccatatcagatcaccacgtgaccgatccatcactgcccacgttgcg |
38093480 |
T |
|
| Q |
115 |
agaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacgatataccaaaaagacaaacacaagtcatcgctgttgaacggtc |
214 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| | |
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| T |
38093481 |
agcaaacaaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccaccacataccaaaaagacaaacacaagtcatcggtgttgaacggcc |
38093580 |
T |
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| Q |
215 |
ggagaaccatactc |
228 |
Q |
| |
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||||||||| |||| |
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| T |
38093581 |
ggagaaccagactc |
38093594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 55728927 - 55729059
Alignment:
| Q |
78 |
atcaccacgtgaccgatccatcactacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacgatatac |
177 |
Q |
| |
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|||||||||||||||||| ||||| ||| | |||| ||| |||| |||||||||||||||| ||||||||||| ||||||| |||||||||| |||| |
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| T |
55728927 |
atcaccacgtgaccgatctatcaccacctacgttgcgagcaaacaaaacctacatccaccgtcaagaaagaaagcggatctaatatcaaccatcgcatac |
55729026 |
T |
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| Q |
178 |
caaaaagacaaacacaagtcatcgctgttgaac |
210 |
Q |
| |
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| ||||||||||| |||| ||||| |||||||| |
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|
| T |
55729027 |
cgaaaagacaaactcaagccatcggtgttgaac |
55729059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 24957620 - 24957533
Alignment:
| Q |
85 |
cgtgaccgatccatcactacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacga |
172 |
Q |
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|||||||||| |||||| ||| |||||| ||| |||| ||||| || ||||| |||||||||||||| |||||||||||||||||| |
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| T |
24957620 |
cgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacccacctccaagaaagaaaacaaatctgatatcaaccacga |
24957533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 14950295 - 14950161
Alignment:
| Q |
75 |
cagatcaccacgtgaccgatccatcactacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacgata |
174 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | || | || |||| |||||||||||||||| |||||||||||||||||||| |||||||||| | |
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| T |
14950295 |
cagatcaccacgtgaccgatccatcaccacctacgtcgcaagcaaacaaaacctacatccaccgtcaagaaagaaaacggatctggtatcaaccaccgca |
14950196 |
T |
|
| Q |
175 |
taccaaaaagacaaacacaagtcatcgctgttgaa |
209 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||| |
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| T |
14950195 |
taccaaaaagacaaactcaagccatcggtgttgaa |
14950161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 38531210 - 38531088
Alignment:
| Q |
89 |
accgatccatcactacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacgatataccaaaaagacaa |
188 |
Q |
| |
|
||||||||||||| || |||||| || |||| |||||| |||||||| |||||||||||||| |||||| |||||||||| | ||||||||||||||| |
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| T |
38531210 |
accgatccatcaccacatatgttgcgaacaaacaaaacctccatccaccaccaagaaagaaaacagatctggtatcaaccaccacataccaaaaagacaa |
38531111 |
T |
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| Q |
189 |
acacaagtcatcgctgttgaacg |
211 |
Q |
| |
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|| |||| ||||| ||||||||| |
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| T |
38531110 |
actcaagccatcggtgttgaacg |
38531088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 14950368 - 14950314
Alignment:
| Q |
19 |
gaaaccaccgcgaaccaccacaacccaacacaacaaaatatccatcaaaaccata |
73 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| || ||||||||||||| |
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|
| T |
14950368 |
gaaaccaccacgaaccaccacaaaccaacacaacaaaaaattcatcaaaaccata |
14950314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 38531286 - 38531247
Alignment:
| Q |
34 |
caccacaacccaacacaacaaaatatccatcaaaaccata |
73 |
Q |
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|
|||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
38531286 |
caccacaaaccaacacaacaaaaaatccatcaaaaccata |
38531247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 3921605 - 3921659
Alignment:
| Q |
20 |
aaaccaccgcgaaccaccacaacccaacacaacaaaatatccatcaaaaccatat |
74 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||| ||| ||||||||||||||||| |
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|
| T |
3921605 |
aaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatat |
3921659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 12156590 - 12156724
Alignment:
| Q |
78 |
atcaccacgtgaccgatccatcactacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacgatatac |
177 |
Q |
| |
|
||||||||||||| |||||||||| ||| | ||| || |||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |
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|
| T |
12156590 |
atcaccacgtgactgatccatcaccacctacattgcaagcaaacaaaacctacatccaccgtcaagaaagaaaacagatctgatatcaaccaccgcatac |
12156689 |
T |
|
| Q |
178 |
caaaaagacaaacacaagtcatcgctgttgaacgg |
212 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||| |
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| T |
12156690 |
caaaaagacaaactcaagccatcggtgttgaacgg |
12156724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 30845650 - 30845752
Alignment:
| Q |
86 |
gtgaccgatccatcactacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacgatataccaaaaaga |
185 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||| |||||| ||||||||||||||| ||||||| || || |||||||||| |||||||||||| |
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|
| T |
30845650 |
gtgaccgatccatctgcacctatgttgcgagaaaacaaaaccttcatccaccgccaagagagaaaacatatatgttatcaaccaccccataccaaaaaga |
30845749 |
T |
|
| Q |
186 |
caa |
188 |
Q |
| |
|
||| |
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|
| T |
30845750 |
caa |
30845752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 30845569 - 30845631
Alignment:
| Q |
19 |
gaaaccaccgcgaaccaccacaacccaacacaacaaaatatccatcaaaaccatatcagatca |
81 |
Q |
| |
|
||||||||| |||| ||||| || |||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
30845569 |
gaaaccaccacgaagcaccataaaccaacacaaccaaaaattcatcaaaaccataacagatca |
30845631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 14350982 - 14350846
Alignment:
| Q |
78 |
atcaccacgtgaccgatccatcactacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaa--cggatctgatatcaaccacgatat |
175 |
Q |
| |
|
|||||||||||| ||||| ||||| ||| | ||| ||| | | |||||||||||||||| ||||||| |||| | ||||| ||||||||||| || |
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|
| T |
14350982 |
atcaccacgtgatcgatctatcaccacctacattgcgagcgagcaaaacctacatccaccgtcaagaaaaaaaaaacagatctaatatcaaccaccgcat |
14350883 |
T |
|
| Q |
176 |
accaaaaagacaaacacaagtcatcgctgttgaacgg |
212 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
14350882 |
accaaaaagacaaactcaagccatcgatgttgaacgg |
14350846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 14351057 - 14351004
Alignment:
| Q |
20 |
aaaccaccgcgaaccaccacaacccaacacaacaaaatatccatcaaaaccata |
73 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
14351057 |
aaaccaccacgaaccaccacaaaccaacacaacaaaaaattcatcaaaaccata |
14351004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 32058769 - 32058893
Alignment:
| Q |
87 |
tgaccgatccatcactacccatgttgggagaaaactaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccacgatataccaaaaagac |
186 |
Q |
| |
|
||||||| | ||||| ||| | |||| ||| |||| ||||| || |||||| ||||| |||||||||||||| |||||||||| | ||||| ||||||| |
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|
| T |
32058769 |
tgaccgacctatcaccacctacgttgcgagcaaacagaaccttcacccaccgtcaagagagaaaacggatctggtatcaaccaccacatacc-aaaagac |
32058867 |
T |
|
| Q |
187 |
aaacacaagtcatcgctgttgaacgg |
212 |
Q |
| |
|
|||| |||| ||| |||||||||| |
|
|
| T |
32058868 |
aaactcaagcaatcagtgttgaacgg |
32058893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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