View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11605_low_15 (Length: 209)

Name: NF11605_low_15
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11605_low_15
NF11605_low_15
[»] chr4 (6 HSPs)
chr4 (28-199)||(24036778-24036949)
chr4 (28-199)||(16564877-16565048)
chr4 (29-198)||(15618184-15618353)
chr4 (38-139)||(22698091-22698192)
chr4 (38-139)||(22982338-22982439)
chr4 (38-139)||(22995925-22996026)
[»] chr8 (4 HSPs)
chr8 (28-199)||(192735-192906)
chr8 (28-199)||(720339-720510)
chr8 (28-199)||(881446-881617)
chr8 (38-139)||(19647551-19647652)
[»] chr3 (3 HSPs)
chr3 (28-199)||(51125947-51126118)
chr3 (28-199)||(16247359-16247529)
chr3 (38-139)||(7011012-7011113)
[»] chr2 (5 HSPs)
chr2 (28-197)||(14035976-14036145)
chr2 (28-197)||(13895349-13895518)
chr2 (28-199)||(5917523-5917694)
chr2 (28-199)||(36310931-36311102)
chr2 (38-139)||(23361600-23361701)
[»] chr5 (4 HSPs)
chr5 (28-197)||(33231806-33231975)
chr5 (28-199)||(22480849-22481020)
chr5 (28-135)||(16841185-16841292)
chr5 (38-139)||(22809358-22809458)
[»] chr1 (3 HSPs)
chr1 (28-197)||(46406837-46407006)
chr1 (28-199)||(35570485-35570656)
chr1 (38-139)||(4345347-4345448)
[»] chr6 (2 HSPs)
chr6 (28-199)||(16546790-16546961)
chr6 (28-199)||(17831339-17831510)
[»] chr7 (1 HSPs)
chr7 (28-199)||(37638041-37638212)
[»] scaffold0394 (1 HSPs)
scaffold0394 (28-199)||(9312-9483)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 24036949 - 24036778
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  24036949 ggttgaagaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt 24036850  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  24036849 agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg 24036778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 16564877 - 16565048
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| |||||||    
T  16564877 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt 16564976  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    ||||||||| |||  || |||||||    ||||||||| ||  | |||||||||||||||||| ||||||||    
T  16564977 agacatttttatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg 16565048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 15618184 - 15618353
Alignment:
Q  29 gttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagta 128  Q
    ||||| |||||||||||||||||||| || | ||| ||||| || || | || |||||||||||||||||| ||| |||| |||||||||| ||||||||    
T  15618184 gttgaagaaatggttgcaatgtttttggtcgttgtaggccatggtgtcgatagtagaatgattcaagaaagatttcaacattcgggtgagactgtaagta 15618283  T
Q  129 gacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctat 198  Q
     |||||| ||||  || |||||||    |||| |||| ||  | |||||||||||||||||| |||||||    
T  15618284 cacatttccatcgtgtacttcatgcatgccttgagttatccttcaaatatattaaacccgaagatcctat 15618353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 22698091 - 22698192
Alignment:
Q  38 atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc 137  Q
    |||||||||||||| ||| ||| |||||| || || || ||||||||||||||||||||||||||  ||||||  || || | ||| ||||||| |||||    
T  22698091 atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttc 22698190  T
Q  138 at 139  Q
    ||    
T  22698191 at 22698192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 22982439 - 22982338
Alignment:
Q  38 atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc 137  Q
    |||||||||||||| ||| ||| |||||| || || || ||||||||||||||||||||||||||  ||||||  || || | ||| ||||||| |||||    
T  22982439 atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttc 22982340  T
Q  138 at 139  Q
    ||    
T  22982339 at 22982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 22996026 - 22995925
Alignment:
Q  38 atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc 137  Q
    |||||||||||||| ||| ||| |||||| || || || ||||||||||||||||||||||||||  ||||||  || || | ||| ||||||| |||||    
T  22996026 atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttc 22995927  T
Q  138 at 139  Q
    ||    
T  22995926 at 22995925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 192735 - 192906
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  192735 ggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt 192834  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  192835 agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg 192906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 720339 - 720510
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  720339 ggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt 720438  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  720439 agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg 720510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 881446 - 881617
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  881446 ggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt 881545  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  881546 agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg 881617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 19647551 - 19647652
Alignment:
Q  38 atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc 137  Q
    |||||||||||||| ||| ||| |||||| || || || ||||||||||||||||||||||||||  ||||||| || || | ||| ||||||| |||||    
T  19647551 atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc 19647650  T
Q  138 at 139  Q
    ||    
T  19647651 at 19647652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 51126118 - 51125947
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  51126118 ggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt 51126019  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  51126018 agacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg 51125947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 16247529 - 16247359
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| ||||| ||||||||||||||||| | |||  ||||||  |||||||||||||| ||||||||||  ||| |||| |||||| ||| | |||||    
T  16247529 ggttgaagaaattgttgcaatgtttttagtcgttgtaagccacgatgtaggtaatagaataattcaagaaatatttcaacattcgggttagactataagt 16247430  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||  || |||||||    ||||||||| ||  | |||||||||||||| ||| ||||||||    
T  16247429 agacattttcatc-ggtacttcatgcatgccttaagttgtccttcaaatatattaaacctgaagatcctatg 16247359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 7011012 - 7011113
Alignment:
Q  38 atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc 137  Q
    |||||||||||||| ||| ||| |||||| || || || ||||||| ||||||||||||||||||  ||||||| || || | ||| ||||||| |||||    
T  7011012 atggttgcaatgttcttacttgttgttggacatggagtgggtaataaaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc 7011111  T
Q  138 at 139  Q
    ||    
T  7011112 at 7011113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 14035976 - 14036145
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  14035976 ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagt 14036075  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatccta 197  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  14036076 agacattttcatcaagtgcttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta 14036145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 13895349 - 13895518
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||    
T  13895349 ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagt 13895448  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatccta 197  Q
    ||| ||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  13895449 agatattttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta 13895518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 5917694 - 5917523
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| |||||||    
T  5917694 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt 5917595  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||  || |||||||    ||||||||| ||  | |||||||||||||||||| ||||||||    
T  5917594 agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg 5917523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 36310931 - 36311102
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| |||||||    
T  36310931 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt 36311030  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||  || |||||||    ||||||||| ||  | |||||||||||||||||| ||||||||    
T  36311031 agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg 36311102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 23361701 - 23361600
Alignment:
Q  38 atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc 137  Q
    |||||||||||||| ||| ||| |||||| || || || ||||||||||||||||||||||||||  ||||||| || || | ||| ||||||| |||||    
T  23361701 atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc 23361602  T
Q  138 at 139  Q
    ||    
T  23361601 at 23361600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 33231806 - 33231975
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||    
T  33231806 ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagt 33231905  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatccta 197  Q
    ||| ||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  33231906 agatattttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta 33231975  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 22480849 - 22481020
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| |||||||    
T  22480849 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt 22480948  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||  || |||||||    ||||||||| ||  | |||||||||||||||||| ||||||||    
T  22480949 agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg 22481020  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 16841185 - 16841292
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| ||||||||||||||||||||  | | ||| || || || ||||||||||||||||||||| |||| ||| |||||| | |||||| |||||||    
T  16841185 ggttgaagaaatggttgcaatgttttttatcgttgtaggtcatggtgtaggtaatagaatgattcaataaagatttcaacacttgagtgagactgtaagt 16841284  T
Q  128 agacattt 135  Q
    || |||||    
T  16841285 agtcattt 16841292  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 22809358 - 22809458
Alignment:
Q  38 atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc 137  Q
    |||||||||||||| ||| ||| |||||| || || || ||||||||||||||||||||||||||  ||||||| || || | ||| ||||||| |||||    
T  22809358 atggttgcaatgttcttacttgttgttggaca-ggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc 22809456  T
Q  138 at 139  Q
    ||    
T  22809457 at 22809458  T

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Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 46406837 - 46407006
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |||    
T  46406837 ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgagtgagactgttagt 46406936  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatccta 197  Q
    |||  |||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  46406937 agatgttttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta 46407006  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 35570656 - 35570485
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| |||||||    
T  35570656 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt 35570557  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||  || |||||||    ||||||||| ||  | |||||||||||||||||| ||||||||    
T  35570556 agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg 35570485  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 4345347 - 4345448
Alignment:
Q  38 atggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagtagacattttc 137  Q
    |||||||||||||| ||| ||| |||||| || || || ||||||||||||||||||||||||||  ||||||| || || | ||| ||||||| |||||    
T  4345347 atggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttc 4345446  T
Q  138 at 139  Q
    ||    
T  4345447 at 4345448  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 16546790 - 16546961
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| |||||||    
T  16546790 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt 16546889  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||  || |||||||    ||||||||| ||  | |||||||||||||||||| ||||||||    
T  16546890 agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg 16546961  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 17831510 - 17831339
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| ||||||   || ||||||||||||||||||||||| ||| |||| | |||||||| |||||||    
T  17831510 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacaatgtcggtaatagaatgattcaagaaagatttcaacattagggtgagactgtaagt 17831411  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||| ||||  || |||||||    ||||||||| ||  | |||||||||||||||||| ||||||||    
T  17831410 agacatttacatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctatg 17831339  T

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Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 37638041 - 37638212
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| |||||||| || ||||||||||||||||||||||| ||| |||| |||||||||| |||||||    
T  37638041 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt 37638140  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||||||||  || |||||||    |||||| || ||  | |||||||||||||||||| ||||||||    
T  37638141 agacattttcatcgtgtacttcatgcatgccttaaattgtccttcaaatatattaaacccgaagatcctatg 37638212  T

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Target: scaffold0394 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 9483 - 9312
Alignment:
Q  28 ggttgatgaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggttttaacactcgggtgagattgtaagt 127  Q
    |||||| |||||||||||||||||||| || | ||| |||||| | || ||||||||||||||||||||||| ||| |||| | |||||||| |||||||    
T  9483 ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacagtgtcggtaatagaatgattcaagaaagatttcaacatttgggtgagactgtaagt 9384  T
Q  128 agacattttcatcaagtgcttcatgtcgtccttaagttttctatgaaatatattaaacccgaatatcctatg 199  Q
    |||||||| ||||  || |||||||    ||||||||| ||  | ||||||||||||||| || ||||||||    
T  9383 agacatttccatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccaaagatcctatg 9312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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