View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11605_low_2 (Length: 931)
Name: NF11605_low_2
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11605_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 822; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 1 - 909
Target Start/End: Complemental strand, 19856520 - 19855612
Alignment:
| Q |
1 |
attactagaatggattttggctagaatggtgcttcatccagagatacaagcaaaagtacaagaagaaatttaccgtgttgttggaaattccaaagttatc |
100 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856520 |
attactagaatggattctggctaggatggtgcttcatccagagatacaagcaaaagcacaagaagaaatttaccgtgttgttggaaattccaaagttatc |
19856421 |
T |
|
| Q |
101 |
aatgatgctgatgttcaaaaaatgtgttacttgcaatgcattgtgaaggaagcattaagagtgcatccaccaggaccacttttatcatgggcacgtttag |
200 |
Q |
| |
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| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19856420 |
actgatgctgatgttcaaaaaatgtgttacttacagtgcattgtgaaggaagcattaagagtgcatccaccaggaccacttttatcatgggcacgtttag |
19856321 |
T |
|
| Q |
201 |
ctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgtggaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19856320 |
ctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgtggaatga |
19856221 |
T |
|
| Q |
301 |
accagaagagtttaagccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcaccatttggagctggtaggagggtttgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19856220 |
accagaagagtttaagccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcaccatttggagctggtaggagggtttgt |
19856121 |
T |
|
| Q |
401 |
cctggaaaagctatgggtttggcttctgttcatctttggttggctcagttacttcacaacttcaaatgggttccatgtgatgattcacttgttgatttgg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
19856120 |
cctggaaaagctatgggtttggcttctgttcatctttggtttgctcagttgcttcacaacttcaaatgggtttcatgtgatgattcacttgttgatttgg |
19856021 |
T |
|
| Q |
501 |
atgaatgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgttccaattccaaggacctagggctaagctaatgttagtgtttgaat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19856020 |
atgaatgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgttccaattccaaggacctagggctaagctaatgttagtgtttgaat |
19855921 |
T |
|
| Q |
601 |
ttgccaaacttttgtgagaaagttggtcatggatcttgtggggtttggtttctttgctttgtttgggaaaagggtatttgcttagtagggttatgatttc |
700 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||| |
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|
| T |
19855920 |
ttgccaaacttttgtgagaaagttgatcatggatcatgtggggtttggtttatttgctttgtttggcaaaagggta-ttgctaagtagggttatgatttc |
19855822 |
T |
|
| Q |
701 |
ata-ggttttttctatttagaatctaattttaaatgcaatttatgttttgttgttgaccgtttaggtttattagttaagtgggtgttgggagttttaatt |
799 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
19855821 |
atagggttttttctatttagaatctaattttaaatgcaattcatgttttgttgttgaccgtttaggtttatcagtgaagtgggtgttgggagttttaatt |
19855722 |
T |
|
| Q |
800 |
tactttgaaccgttgctaattaagtagtagatgtttggttttagtccaatgtcttctttctctatatgctgtaaatgggtgcttttaatttctaatgata |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19855721 |
tactttgaaccgttgctaattaagtagtagatgtttggttttggtccaatgtcttctttctctatatgctgtaaatgggtgcttttaatttctaatgata |
19855622 |
T |
|
| Q |
900 |
atcatgtcat |
909 |
Q |
| |
|
|||||||||| |
|
|
| T |
19855621 |
atcatgtcat |
19855612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 196 - 643
Target Start/End: Complemental strand, 32830523 - 32830085
Alignment:
| Q |
196 |
tttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgtgg |
295 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
32830523 |
tttagctgttcatgatgttatggtaggtgagaagcatgttccgaaaggtacaactggtatggtgaatatgtgggctataacacatgatgagaaggtttac |
32830424 |
T |
|
| Q |
296 |
aatgaaccagaagagtttaa--gccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcaccatttggagctggtaggag |
393 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
32830423 |
aatgaggcaaaagagtttaaaagccagagaggtttatgaatgaggaagtgagtacaatgggatatgatttgacgttagcaccatttggagctggtaggag |
32830324 |
T |
|
| Q |
394 |
ggtttgtcctggaaaagctatgggtttggcttctgttcatctttggttggctcagttacttcacaacttcaaatgggttccatgtgatgattcacttgtt |
493 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
32830323 |
ggtttgtcctggaaaagctatggatttggcttttgttcatctttggcttgctcagttacttcacaacttcaaatgggttccatttgatgattcacctgtt |
32830224 |
T |
|
| Q |
494 |
gatttggatgaatgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgttccaattccaaggacctagggctaagctaatgttagtg |
593 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||||| || | |||||||||| ||||||||||||| |
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|
| T |
32830223 |
gatttggatgaatgtcttatgctttctgtggagatgaagaaaccacttctgtgcaaggttg------ttgctaggacctagg-----gctaatgttagtg |
32830135 |
T |
|
| Q |
594 |
tttgaatttgccaaacttttgtgagaaagttggtcatggatcttgtgggg |
643 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||| ||||||||||||||| |
|
|
| T |
32830134 |
tttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgggg |
32830085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 197 - 519
Target Start/End: Original strand, 35080901 - 35081224
Alignment:
| Q |
197 |
ttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgtgga |
296 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
35080901 |
ttagctgttcatgatgttatggtaggtgagaagcatgttccgaaaggtacaactgctatggtgaatatgtgggttataacacatgatgagaaggtttgca |
35081000 |
T |
|
| Q |
297 |
atgaaccagaagagtttaa--gccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcaccatttggagctggtaggagg |
394 |
Q |
| |
|
|||| || |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
35081001 |
atgaggcaaaagagtttaaaagcgagagaggtttatgaatgaggaagtgagtataatgggatctgatttgacgttagcac-atttggagctggtaggagg |
35081099 |
T |
|
| Q |
395 |
gtttgtcctggaaaagctatgggtttggcttctgttcatctttggttggctcagttacttcacaacttcaaatgggttccatgtgatgattcacttgttg |
494 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
35081100 |
gtttgtcctggaaaagctatggatttggcttctgttcatctttggcttgctcagttacttcacaacttcaaatgggttccatgtgatgattcacctattg |
35081199 |
T |
|
| Q |
495 |
atttggatgaatgtcttaagctttc |
519 |
Q |
| |
|
|||||||| ||||||||| |||||| |
|
|
| T |
35081200 |
atttggattaatgtcttatgctttc |
35081224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 194 - 351
Target Start/End: Complemental strand, 39428039 - 39427880
Alignment:
| Q |
194 |
cgtttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgt |
293 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
39428039 |
cgtttagttgttcatgatgttatggtaggtgagaagcatgttccgaaaggtacaactgctatggtgaatatatgggctataacacatgatgagaaggttt |
39427940 |
T |
|
| Q |
294 |
ggaatgaaccagaagagttt--aagccagagaggtttatgaatgaggatgtgagtataat |
351 |
Q |
| |
|
| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39427939 |
gcaatgaggcaaaagagtttaaaagccagagaggtttatgaatgaggaagtgagtataat |
39427880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 480 - 556
Target Start/End: Complemental strand, 39427879 - 39427803
Alignment:
| Q |
480 |
atgattcacttgttgatttggatgaatgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgtt |
556 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||||| | |||||||||| |||| |||||||||||||||||| |
|
|
| T |
39427879 |
atgattcacctgttgatttggatgaatatcttatgctttatgtggagatgaagaaactgcttgtgtgcaaggttgtt |
39427803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 581 - 643
Target Start/End: Original strand, 35081257 - 35081319
Alignment:
| Q |
581 |
gctaatgttagtgtttgaatttgccaaacttttgtgagaaagttggtcatggatcttgtgggg |
643 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||| ||||| ||| ||||||||||| |
|
|
| T |
35081257 |
gctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatgaatcttgtgggg |
35081319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 197 - 643
Target Start/End: Original strand, 8748312 - 8748767
Alignment:
| Q |
197 |
ttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgtgga |
296 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
8748312 |
ttagctgttcatgatgttatggtaggtgagaagcatgttccgaaaggtacaactgctatggtgaatatgtgggttataacacatgatgagaaggtttgca |
8748411 |
T |
|
| Q |
297 |
atgaaccagaagagtttaa--gccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcaccatttggagctggtaggagg |
394 |
Q |
| |
|
|||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
8748412 |
atgaggcaaaagagtttaaaagccagagaggtttatgaatgaggaagtgagtataatgggatctgatttgacgttagcac-atttggagctggtaggagg |
8748510 |
T |
|
| Q |
395 |
gtttgtcctggaaaagctatgggtttggcttctgttcatctttggttggctcagttacttcac-------------------aacttcaaatgggttcca |
475 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8748511 |
gtttgtcctggaaaagctatggatttggcttctgttcatctttggcttgcttagttacttcacaacttcaaatgggttccataacttcaaatgggttcca |
8748610 |
T |
|
| Q |
476 |
tgtgatgattcacttgttgatttggatgaatgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgttccaattccaaggacctagg |
575 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||| || | |||||||||| |
|
|
| T |
8748611 |
tgtgatgattcacctattgatttggattaatgtcttatgctttctgtggagatgaagaaaccacttgtgtgcaaggttg------ttgctaggacctagg |
8748704 |
T |
|
| Q |
576 |
gctaagctaatgttagtgtttgaatttgccaaacttttgtgagaaagttggtcatggatcttgtgggg |
643 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||| |
|
|
| T |
8748705 |
-----gctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgggg |
8748767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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