View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11605_low_4 (Length: 583)

Name: NF11605_low_4
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11605_low_4
NF11605_low_4
[»] chr2 (28 HSPs)
chr2 (370-566)||(10989976-10990173)
chr2 (4-55)||(2334235-2334286)
chr2 (4-55)||(14633645-14633696)
chr2 (4-71)||(5723056-5723124)
chr2 (4-55)||(723564-723615)
chr2 (4-55)||(34139590-34139641)
chr2 (4-55)||(36987892-36987943)
chr2 (4-55)||(42362645-42362696)
chr2 (4-71)||(36205464-36205533)
chr2 (4-55)||(6594821-6594872)
chr2 (3-46)||(11690786-11690829)
chr2 (4-55)||(24885885-24885936)
chr2 (4-55)||(33162271-33162322)
chr2 (4-55)||(36773858-36773909)
chr2 (78-203)||(10989689-10989814)
chr2 (4-71)||(4484128-4484196)
chr2 (4-71)||(4502933-4503001)
chr2 (4-71)||(45100054-45100122)
chr2 (4-55)||(17057186-17057237)
chr2 (4-55)||(17085169-17085220)
chr2 (4-55)||(38312540-38312591)
chr2 (4-53)||(30833648-30833697)
chr2 (4-74)||(32289868-32289940)
chr2 (4-71)||(6266994-6267061)
chr2 (4-39)||(11067600-11067635)
chr2 (5-71)||(14202224-14202291)
chr2 (5-44)||(29868169-29868208)
chr2 (5-46)||(11151422-11151463)
[»] chr7 (36 HSPs)
chr7 (353-567)||(24285233-24285448)
chr7 (72-226)||(24284963-24285117)
chr7 (369-566)||(21195492-21195690)
chr7 (72-201)||(24121140-24121269)
chr7 (3-55)||(41648831-41648883)
chr7 (79-196)||(3493980-3494097)
chr7 (4-53)||(4179073-4179122)
chr7 (4-74)||(35854216-35854288)
chr7 (3-46)||(14069660-14069703)
chr7 (3-46)||(14379688-14379731)
chr7 (4-55)||(25616155-25616206)
chr7 (4-55)||(38671042-38671093)
chr7 (4-55)||(48489731-48489782)
chr7 (4-46)||(23555341-23555383)
chr7 (4-46)||(47675963-47676005)
chr7 (4-43)||(19502478-19502517)
chr7 (4-71)||(24790304-24790371)
chr7 (4-55)||(29991353-29991404)
chr7 (4-43)||(36146241-36146280)
chr7 (4-74)||(48409107-48409178)
chr7 (3-71)||(1113951-1114021)
chr7 (5-55)||(8153638-8153688)
chr7 (72-142)||(21200443-21200513)
chr7 (4-46)||(41317265-41317307)
chr7 (5-46)||(18126947-18126988)
chr7 (4-71)||(25766757-25766825)
chr7 (4-71)||(39731671-39731739)
chr7 (4-55)||(495805-495856)
chr7 (4-55)||(23344265-23344315)
chr7 (72-119)||(24239002-24239049)
chr7 (8-55)||(27348121-27348168)
chr7 (5-55)||(24525323-24525373)
chr7 (4-46)||(26417616-26417658)
chr7 (4-46)||(31732795-31732837)
chr7 (4-46)||(47673771-47673813)
chr7 (5-46)||(43864545-43864586)
[»] chr8 (26 HSPs)
chr8 (8-71)||(42498499-42498562)
chr8 (4-71)||(5689567-5689635)
chr8 (4-55)||(30143640-30143691)
chr8 (4-55)||(41366435-41366486)
chr8 (4-71)||(19945158-19945227)
chr8 (4-55)||(4731958-4732009)
chr8 (4-55)||(6599265-6599316)
chr8 (4-55)||(6674718-6674769)
chr8 (4-55)||(12702448-12702499)
chr8 (4-55)||(44304155-44304206)
chr8 (4-46)||(15213086-15213128)
chr8 (4-46)||(34254157-34254199)
chr8 (4-46)||(34256333-34256375)
chr8 (4-53)||(17982953-17983002)
chr8 (8-71)||(31218561-31218625)
chr8 (4-55)||(1746036-1746087)
chr8 (4-55)||(18105893-18105944)
chr8 (4-46)||(3303497-3303539)
chr8 (13-71)||(7493296-7493352)
chr8 (5-71)||(8154081-8154147)
chr8 (4-56)||(27811578-27811632)
chr8 (4-46)||(2628039-2628081)
chr8 (4-74)||(4734006-4734078)
chr8 (4-46)||(4743054-4743096)
chr8 (4-46)||(43036722-43036764)
chr8 (8-44)||(40321379-40321415)
[»] chr5 (24 HSPs)
chr5 (4-71)||(16409779-16409846)
chr5 (4-55)||(16649652-16649703)
chr5 (4-75)||(13343360-13343433)
chr5 (4-71)||(30182888-30182957)
chr5 (4-72)||(36073842-36073911)
chr5 (3-55)||(31183272-31183324)
chr5 (4-55)||(5887252-5887303)
chr5 (4-46)||(30682749-30682791)
chr5 (4-46)||(39468375-39468417)
chr5 (4-46)||(42428257-42428299)
chr5 (5-71)||(25413061-25413129)
chr5 (4-71)||(37439441-37439510)
chr5 (4-55)||(8565765-8565816)
chr5 (4-55)||(9789039-9789090)
chr5 (4-55)||(13240051-13240102)
chr5 (4-43)||(33831978-33832017)
chr5 (4-46)||(534058-534100)
chr5 (4-46)||(3075576-3075618)
chr5 (4-46)||(19806662-19806704)
chr5 (4-46)||(28750482-28750524)
chr5 (4-46)||(32637123-32637165)
chr5 (4-74)||(18441438-18441510)
chr5 (4-43)||(42426065-42426104)
chr5 (4-46)||(538320-538362)
[»] chr4 (24 HSPs)
chr4 (4-71)||(48143348-48143417)
chr4 (4-71)||(29999628-29999697)
chr4 (4-55)||(48893460-48893511)
chr4 (4-55)||(56178453-56178504)
chr4 (5-71)||(5369881-5369949)
chr4 (4-55)||(34570231-34570282)
chr4 (4-55)||(45687004-45687055)
chr4 (4-55)||(47038233-47038284)
chr4 (4-46)||(26175463-26175505)
chr4 (4-46)||(52467184-52467226)
chr4 (4-74)||(54199705-54199776)
chr4 (4-55)||(52082480-52082531)
chr4 (4-46)||(12743755-12743797)
chr4 (5-71)||(31474447-31474512)
chr4 (4-46)||(46147222-46147264)
chr4 (5-55)||(52095179-52095229)
chr4 (5-46)||(37740926-37740967)
chr4 (4-55)||(5872117-5872166)
chr4 (7-46)||(9927285-9927324)
chr4 (4-51)||(13992112-13992159)
chr4 (4-55)||(36463213-36463264)
chr4 (4-46)||(12739380-12739422)
chr4 (4-54)||(29254793-29254842)
chr4 (4-46)||(31495130-31495172)
[»] chr3 (36 HSPs)
chr3 (4-71)||(9581583-9581652)
chr3 (4-71)||(9635923-9635992)
chr3 (4-55)||(22834824-22834875)
chr3 (4-71)||(23197745-23197812)
chr3 (4-71)||(23199938-23200005)
chr3 (4-55)||(40734797-40734848)
chr3 (4-71)||(7764765-7764834)
chr3 (5-74)||(29682657-29682729)
chr3 (4-53)||(761144-761193)
chr3 (4-73)||(45095463-45095532)
chr3 (4-71)||(40735682-40735750)
chr3 (4-55)||(5260140-5260191)
chr3 (4-72)||(9634620-9634689)
chr3 (4-55)||(9666287-9666338)
chr3 (4-71)||(5257943-5258012)
chr3 (4-46)||(7762566-7762608)
chr3 (4-71)||(19683687-19683756)
chr3 (4-46)||(29196216-29196258)
chr3 (4-46)||(39153191-39153233)
chr3 (3-55)||(31314739-31314791)
chr3 (4-55)||(2074900-2074950)
chr3 (4-55)||(16499314-16499365)
chr3 (3-46)||(29813360-29813403)
chr3 (8-55)||(51399118-51399165)
chr3 (5-55)||(5236274-5236324)
chr3 (4-44)||(23410160-23410200)
chr3 (4-55)||(27305536-27305585)
chr3 (4-44)||(37408759-37408799)
chr3 (4-71)||(7779802-7779869)
chr3 (4-55)||(37406989-37407040)
chr3 (4-55)||(44700301-44700352)
chr3 (4-46)||(801390-801432)
chr3 (4-46)||(23391739-23391781)
chr3 (4-46)||(29811168-29811210)
chr3 (4-38)||(32891390-32891424)
chr3 (18-71)||(43403530-43403586)
[»] scaffold0016 (1 HSPs)
scaffold0016 (4-71)||(114903-114971)
[»] chr6 (17 HSPs)
chr6 (4-71)||(33160150-33160219)
chr6 (4-80)||(2171317-2171395)
chr6 (4-55)||(5408887-5408938)
chr6 (4-55)||(5413212-5413263)
chr6 (4-47)||(9182856-9182899)
chr6 (4-55)||(26954108-26954159)
chr6 (4-55)||(28137228-28137279)
chr6 (5-76)||(31404469-31404542)
chr6 (4-71)||(412389-412456)
chr6 (4-55)||(3038744-3038795)
chr6 (4-55)||(16452145-16452196)
chr6 (4-71)||(5406002-5406071)
chr6 (4-71)||(5410327-5410396)
chr6 (13-71)||(22963508-22963568)
chr6 (13-71)||(23824825-23824885)
chr6 (4-55)||(30834351-30834402)
chr6 (4-46)||(3072583-3072625)
[»] chr1 (28 HSPs)
chr1 (4-56)||(50169031-50169083)
chr1 (4-55)||(833987-834038)
chr1 (4-55)||(8550601-8550652)
chr1 (4-55)||(49918650-49918701)
chr1 (4-71)||(51765699-51765766)
chr1 (4-71)||(20762968-20763037)
chr1 (4-55)||(40122018-40122069)
chr1 (4-55)||(45644175-45644226)
chr1 (4-55)||(50166997-50167048)
chr1 (4-44)||(3157165-3157205)
chr1 (4-56)||(3189644-3189696)
chr1 (4-56)||(3198461-3198513)
chr1 (4-56)||(3207300-3207352)
chr1 (4-55)||(3846938-3846989)
chr1 (5-73)||(13316149-13316219)
chr1 (4-55)||(13659168-13659219)
chr1 (8-55)||(37503379-37503426)
chr1 (4-71)||(40282682-40282749)
chr1 (4-46)||(4552475-4552517)
chr1 (5-55)||(10925523-10925573)
chr1 (4-46)||(13137807-13137849)
chr1 (4-46)||(28223248-28223290)
chr1 (6-55)||(28265376-28265425)
chr1 (72-128)||(15381122-15381178)
chr1 (4-55)||(196727-196778)
chr1 (4-46)||(30476273-30476315)
chr1 (4-46)||(37559691-37559733)
chr1 (4-74)||(1833808-1833879)
[»] scaffold0491 (2 HSPs)
scaffold0491 (4-71)||(10960-11027)
scaffold0491 (4-71)||(8534-8601)
[»] scaffold0286 (1 HSPs)
scaffold0286 (4-80)||(11866-11944)
[»] scaffold0006 (1 HSPs)
scaffold0006 (4-55)||(148929-148980)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-55)||(434834-434885)
[»] scaffold0066 (1 HSPs)
scaffold0066 (4-46)||(20241-20283)
[»] scaffold1668 (1 HSPs)
scaffold1668 (5-46)||(1328-1369)
[»] scaffold1519 (1 HSPs)
scaffold1519 (4-71)||(1216-1285)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 370 - 566
Target Start/End: Original strand, 10989976 - 10990173
Alignment:
Q  370 tggttgatcccaagttctctgcttcaaaatcatcaagttgtggagagtttgtaaaaggaccgtcaaaatagatggttacagacgacttggttgtgactcc 469  Q
    |||||||||| |||  ||||||||||||||| || ||||||||||| ||||  ||||| || | || ||| ||||| ||||| |||||||||||||||||    
T  10989976 tggttgatcctaagaactctgcttcaaaatcttccagttgtggagaatttgccaaaggtccattaagatacatggtgacagatgacttggttgtgactcc 10990075  T
Q  470 aaatgtcatcctctactgttatttcacatctaaatagttcaaatgttcctg--tttgatgtggaggaaagggtcgttagaattggtctgaatgaggtaa 566  Q
     |||||| ||||   |||  ||||||||||| |||||||||||| ||||||  | |||||| ||||||| ||| |||||||||||||||| ||||||||    
T  10990076 -aatgtcgtccttcgctgcaatttcacatctgaatagttcaaatattcctgtatctgatgttgaggaaaaggtggttagaattggtctgagtgaggtaa 10990173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 2334286 - 2334235
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2334286 gttactactttcctttgcttcacacatcatagtttgtattggtgtgattttg 2334235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 14633696 - 14633645
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14633696 gttactactttcctttgcttcacacatcatagtttgtattggtgtgattttg 14633645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 5723124 - 5723056
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttga-ttttgtccggaattcacaaca 71  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  5723124 gttactactttactttgctccacacatcatagtttgtattggtgtgatttttgtacggaattcacaaca 5723056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 723615 - 723564
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  723615 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 723564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 34139641 - 34139590
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  34139641 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 34139590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 36987943 - 36987892
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  36987943 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 36987892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 42362645 - 42362696
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  42362645 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 42362696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 36205533 - 36205464
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||| |||||||||||||||||||| || |||||||  | |||||||||||||||    
T  36205533 gttactactttcctttgctccacacatcatagtttgtattagtgtgattttgagaccggaattcacaaca 36205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 6594872 - 6594821
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||    
T  6594872 gttactactttactttgctccacacatcatagtttgtattggtgtgattttg 6594821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 11690786 - 11690829
Alignment:
Q  3 agttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  11690786 agttactactttcctttgctccacacatcatagtttgtattggt 11690829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 24885885 - 24885936
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  24885885 gttactattttcctttgctacacacatcatagtttgtattggtgtgattttg 24885936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 33162322 - 33162271
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  33162322 gttactactttcctttgctccacacatcatagtttgtattgatgtgattttg 33162271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 36773858 - 36773909
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  36773858 gttactactttcatttgctccacacatcatagtttgtattggtgtgattttg 36773909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 10989689 - 10989814
Alignment:
Q  78 tatgcttcaagcattctcttctttaagctggattgataatttgtacgaaagtgtggctgagttgaattcagatacatgcttaatgtcacagggactcaaa 177  Q
    ||||||||||| |||||||||||||||||| ||||||||||| |||  |||  ||||||| |||| | ||||   ||| |||| |||||| | | ||| |    
T  10989689 tatgcttcaaggattctcttctttaagctgcattgataatttatacagaagcctggctgaattgagtccagacggatgtttaaggtcacaagaattcaga 10989788  T
Q  178 gataaactaactaagcctcctattgc 203  Q
    || |||||||| |||||||| |||||    
T  10989789 gaaaaactaacaaagcctcccattgc 10989814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 4484196 - 4484128
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt-tgtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||| || |||||||| ||||||  | |||||||||||||||    
T  4484196 gttactactttcctttgctccacacatcatatttcgtattggtgtgatttgagaccggaattcacaaca 4484128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 4503001 - 4502933
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt-tgtccggaattcacaaca 71  Q
    |||||||||||||||| || ||||||| ||||||||||||||| ||||||  | |||||||||||||||    
T  4503001 gttactactttcctttactccacacattatagtttgtattggtgtgatttgagaccggaattcacaaca 4502933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 45100054 - 45100122
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt-tgtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||| || |||||||| ||||||  | |||||||||||||||    
T  45100054 gttactactttcctttgctccacacatcataattcgtattggtgtgatttgagaccggaattcacaaca 45100122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 17057237 - 17057186
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  17057237 gttactactttcctttgctctacacatcatattttgtattggtgtgattttg 17057186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 17085220 - 17085169
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  17085220 gttactactttcctttgctctacacatcatattttgtattggtgtgattttg 17085169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 38312540 - 38312591
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||||||||| |||| ||||||| ||||||||    
T  38312540 gttactactttcctttgctccacacatcattgtttatattggtgtgattttg 38312591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 30833648 - 30833697
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt 53  Q
    ||||||||||||||||||| ||||||||||| || |||||||| ||||||    
T  30833648 gttactactttcctttgctccacacatcatatttcgtattggtgtgattt 30833697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 32289868 - 32289940
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacagtt 74  Q
    ||||||||||||||||||| |||||||| || ||||||||||| || ||||  |  |||||||||||||||||    
T  32289868 gttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaattcacaacagtt 32289940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 6266994 - 6267061
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||| ||| ||||||||| |||||||||||||||  |||||| || ||| |||||| ||||||||||    
T  6266994 gttaccactctcctttgctccacacatcatagtttacattggtgtggtttcgtccgggattcacaaca 6267061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 11067600 - 11067635
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttg 39  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11067600 gttactactttcctttgctccacacatcatagtttg 11067635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 14202291 - 14202224
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtc-cggaattcacaaca 71  Q
    ||||||||||||||| || |||| |||||||||||| ||||| |||||||| | | ||||||||||||    
T  14202291 ttactactttcctttactccacatatcatagtttgtgttggtatgattttgactccgaattcacaaca 14202224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 29868169 - 29868208
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattg 44  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  29868169 ttactacttttctttgctccacacatcatagtttgtattg 29868208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 11151463 - 11151422
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||  |||||| |||||||||||||||||||||||    
T  11151463 ttactacttttatttgctccacacatcatagtttgtattggt 11151422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 353 - 567
Target Start/End: Original strand, 24285233 - 24285448
Alignment:
Q  353 gtgtgtgcgcttgaacttggttgatcccaagttctctgcttcaaaatcatcaagttgtggagagtttgtaaaaggaccgtcaaaatagatggttacagac 452  Q
    ||||||||  ||||| || |||||||| ||||  ||||||||||||||||||||||||||||| |||| ||||||||| |||  ||| |||||||||||     
T  24285233 gtgtgtgcttttgaattttgttgatcctaagtattctgcttcaaaatcatcaagttgtggagaatttgcaaaaggaccatcagtatacatggttacagat 24285332  T
Q  453 gacttggttgtgactccaaatgtcatcctctactgttatttcacatctaaatagttcaaatgtt--cctgtttgatgtggaggaaagggtcgttagaatt 550  Q
    ||||| ||||||||||| ||  |||||||  | || |||||||||||| || |||| ||| |||  ||| | |||||| |||||||  || |||||||||    
T  24285333 gacttagttgtgactcc-aacctcatccttcaatgctatttcacatctgaagagtttaaacgttcccctatctgatgtagaggaaaaagtggttagaatt 24285431  T
Q  551 ggtctgaatgaggtaat 567  Q
    ||| |||| ||||||||    
T  24285432 ggtgtgaacgaggtaat 24285448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 24284963 - 24285117
Alignment:
Q  72 gttgcatatgcttcaagcattctcttctttaagctggattgataatttgtacgaaagtgtggctgagttgaattcagatacatgcttaatgtcacaggga 171  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| ||  |||| ||  |||| |||| | |||||||||   ||| |||||| | |    
T  24284963 gttgcatatgcttcaaggattctcttctttaagctgcattgataatttatataaaagcgtaactgaattgagtccagatacatatctaacgtcacaagaa 24285062  T
Q  172 ctcaaagataaactaactaagcctcctattgcagttcaatctgatctcagcaatc 226  Q
    || ||||||||||||||||||||||| |||||||  |||| ||| ||||||||||    
T  24285063 cttaaagataaactaactaagcctcccattgcagcacaatttgagctcagcaatc 24285117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 369 - 566
Target Start/End: Original strand, 21195492 - 21195690
Alignment:
Q  369 ttggttgatcccaagttctctgcttcaaaatcatcaagttgtggagagtttgtaaaaggaccgtcaaaatagatggttacagacgacttggttgtgactc 468  Q
    ||||||||||| ||| | |||||||||||  |||||||| ||||||| |||| |||||| || |||  ||| ||||| ||||  ||||||| | | ||||    
T  21195492 ttggttgatcctaagctatctgcttcaaacgcatcaagtcgtggagaatttgcaaaagggccatcagtatacatggtgacagttgacttggctattactc 21195591  T
Q  469 caaatgtcatcctctactgttatttcacatctaaatagttcaaatgttcctgtt--tgatgtggaggaaagggtcgttagaattggtctgaatgaggtaa 566  Q
    ||| |||||||||  |||| ||| |||||| ||||||||||||||||| || |   ||||||||| |||||||| ||||||||||||| ||| |||||||    
T  21195592 caa-tgtcatccttcactgctatatcacatttaaatagttcaaatgtttctctaaatgatgtggaagaaagggttgttagaattggtcagaaggaggtaa 21195690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 24121269 - 24121140
Alignment:
Q  72 gttgcatatgcttcaagcattctcttctttaagctggattgataatttgtacgaaagtgtggctgagttgaattcagatacatgcttaatgtcacaggga 171  Q
    |||||| |||||  ||| |||||||||||||||||| ||||||| ||| ||  ||||  || ||||||||||| |||| | ||| |||| |||||||| |    
T  24121269 gttgcaaatgctagaaggattctcttctttaagctgcattgatattttatataaaagcatgactgagttgaatgcagagagatgtttaacgtcacaggaa 24121170  T
Q  172 ctcaaagataaactaactaagcctcctatt 201  Q
    |||||| | |||||||||||||||| ||||    
T  24121169 ctcaaaaacaaactaactaagcctcgtatt 24121140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 41648883 - 41648831
Alignment:
Q  3 agttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  41648883 agttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 41648831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 3494097 - 3493980
Alignment:
Q  79 atgcttcaagcattctcttctttaagctggattgataatttgtacgaaagtgtggctgagttgaattcagatacatgcttaatgtcacagggactcaaag 178  Q
    |||||||||| |||||| ||||||||||| |||||||| || ||| | ||  ||   || |||| | |||||| ||   |||||||||||||||||||||    
T  3494097 atgcttcaaggattctcctctttaagctgcattgataacttatacaagagcttgtgcgacttgagtccagatatatatctaatgtcacagggactcaaag 3493998  T
Q  179 ataaactaactaagcctc 196  Q
    ||||||||||||||||||    
T  3493997 ataaactaactaagcctc 3493980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 4179073 - 4179122
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt 53  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  4179073 gttactactttcctttgctccacacatcatagtttgtattggtgtgattt 4179122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 35854216 - 35854288
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacagtt 74  Q
    ||||||||||||||||||| |||||||||||||||||||| || |||||||  | | ||||||||||||||||    
T  35854216 gttactactttcctttgctccacacatcatagtttgtatttgtgtgattttgagactggaattcacaacagtt 35854288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 14069703 - 14069660
Alignment:
Q  3 agttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  14069703 agttactactttcctttgctccacacatcatagtttgtattggt 14069660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 14379731 - 14379688
Alignment:
Q  3 agttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  14379731 agttactactttcctttgctccacacatcatagtttgtattggt 14379688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 25616155 - 25616206
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||||    
T  25616155 gttactactttcctttgctccatacatcatagtttgtattggtgtgattttg 25616206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 38671093 - 38671042
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  38671093 gttactattttcctttgctccacacatcatagtttgtattggtgtgattttg 38671042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 48489731 - 48489782
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  48489731 gttactactttcctttgctccacacatcatagttggtattggtgtgattttg 48489782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 23555341 - 23555383
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  23555341 gttactactttcctttgctccacacatcatagtttgtattggt 23555383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 47676005 - 47675963
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  47676005 gttactactttcctttgctccacacatcatagtttgtattggt 47675963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 19502478 - 19502517
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtatt 43  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  19502478 gttactactttcctttgctccacacatcatagtttgtatt 19502517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 24790304 - 24790371
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||| ||||||| ||||| ||||||||||| |||| |||||| || |||||| ||||||||||||||    
T  24790304 gttaccactttccgttgctccacacatcatactttgcattggtgtgtttttgtacggaattcacaaca 24790371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 29991353 - 29991404
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||    
T  29991353 gttactacttttctttgctccacacatcatagtttgtattggtgtgactttg 29991404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 36146280 - 36146241
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtatt 43  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  36146280 gttactactttcctttgctccacacatcatagtttgtatt 36146241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 48409107 - 48409178
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt-tgtccggaattcacaacagtt 74  Q
    ||||||||||||||||||| ||||||||||| || |||||||| ||||||  | || |||||||||||||||    
T  48409107 gttactactttcctttgctccacacatcatatttcgtattggtgtgatttgagaccagaattcacaacagtt 48409178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 1113951 - 1114021
Alignment:
Q  3 agttactactttcctttgcttcacacatcatagtttgtattggtttga-ttttg-tccggaattcacaaca 71  Q
    |||||| ||||||||||||| ||||||||||||||||||||| | ||| ||||| | ||||||||||||||    
T  1113951 agttaccactttcctttgctccacacatcatagtttgtattgatgtgagttttgattcggaattcacaaca 1114021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 8153638 - 8153688
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||| ||| |||||||||||||||| || ||||||||    
T  8153638 ttactactttcctttgctccacgcatcatagtttgtattagtgtgattttg 8153688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 21200443 - 21200513
Alignment:
Q  72 gttgcatatgcttcaagcattctcttctttaagctggattgataatttgtacgaaagtgtggctgagttga 142  Q
    |||||||||||||||||  ||||||||||||| ||| ||||||||||| ||| |||| ||| | |||||||    
T  21200443 gttgcatatgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccgagttga 21200513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 41317307 - 41317265
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  41317307 gttactactttcctttgctccaaacatcatagtttgtattggt 41317265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 18126947 - 18126988
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  18126947 ttactactttcctttactccacacatcatagtttgtattggt 18126988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 25766825 - 25766757
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt-tgtccggaattcacaaca 71  Q
    ||||||||||| ||||||| ||||||||||| || |||||||| ||||||  | |||||||||||||||    
T  25766825 gttactacttttctttgctccacacatcatatttcgtattggtgtgatttgagaccggaattcacaaca 25766757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 39731671 - 39731739
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgt-attggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||| ||||| || ||| |||||| ||||| |||||| || |||||||||||||||||||||    
T  39731671 gttactacttttctttgttttacatatcatactttgttattggtgtggttttgtccggaattcacaaca 39731739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 495856 - 495805
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||| |||||| |||||||| || ||||||||    
T  495856 gttactactttcctttgctccacatatcataatttgtattagtgtgattttg 495805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 23344265 - 23344315
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||| ||||| | ||||||||    
T  23344265 gttactactttcctttgctccacacatcatagttt-tattgatgtgattttg 23344315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 24239002 - 24239049
Alignment:
Q  72 gttgcatatgcttcaagcattctcttctttaagctggattgataattt 119  Q
    ||||||||||||||||| ||| |||||| ||||||| |||||||||||    
T  24239002 gttgcatatgcttcaaggattttcttctataagctgcattgataattt 24239049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 27348121 - 27348168
Alignment:
Q  8 ctactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  27348121 ctactttcctttgctccacacatcataatttgtatttgtgtgattttg 27348168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 24525373 - 24525323
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||| ||||||| |||| |||||||||||||||| | ||||||||    
T  24525373 ttactacttttctttgctacacatatcatagtttgtattgatgtgattttg 24525323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 26417616 - 26417658
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||| || |||| ||||||||||||||||||    
T  26417616 gttactactttcctttactccacatatcatagtttgtattggt 26417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 31732837 - 31732795
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||| |||||| |||||||||||||||||| ||||    
T  31732837 gttactactttcatttgctccacacatcatagtttgtactggt 31732795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 47673813 - 47673771
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||| |||| | |||||||||||||||||||||||    
T  47673813 gttactactttcttttgttccacacatcatagtttgtattggt 47673771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 43864545 - 43864586
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||| |||||||||| || |||||||||||||||||||||||    
T  43864545 ttaccactttcctttactccacacatcatagtttgtattggt 43864586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 42498499 - 42498562
Alignment:
Q  8 ctactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  42498499 ctactttcctttgctccacacatcatattttgtattggtgtgattttgtccggaattcacaaca 42498562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 5689567 - 5689635
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg-tccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||   ||||||||||||||    
T  5689567 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 30143640 - 30143691
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  30143640 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 30143691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 41366486 - 41366435
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  41366486 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 41366435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 19945227 - 19945158
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||||  | |||||||||||||||    
T  19945227 gttactactttcctttgctccacacatcaaagtttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 4731958 - 4732009
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||||||||| |||||||||||| ||||||||    
T  4731958 gttactactttcctttgctccacacatcattgtttgtattggtgtgattttg 4732009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 6599265 - 6599316
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  6599265 gttactactttcctttgctctacacatcatagtttgtattggtgtgattttg 6599316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 6674718 - 6674769
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  6674718 gttactactttcctttgctctacacatcatagtttgtattggtgtgattttg 6674769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 12702499 - 12702448
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  12702499 gttactactttcctttgctccacacatcatagtttgtattgatgtgattttg 12702448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 44304155 - 44304206
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  44304155 gttactactttcctttgctccacacatcatagtatgtattggtgtgattttg 44304206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 15213086 - 15213128
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  15213086 gttactactttcctttgctccacacatcatagtttgtattggt 15213128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 34254199 - 34254157
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  34254199 gttactactttcctttgctccacacatcatagtttgtattggt 34254157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 34256375 - 34256333
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  34256375 gttactactttcctttgctccacacatcatagtttgtattggt 34256333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 17982953 - 17983002
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt 53  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  17982953 gttactacgttcctttgctccacacatcatagtttgtattggtgtgattt 17983002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 31218561 - 31218625
Alignment:
Q  8 ctactttcctttgcttcacacatcatagtttgtattggtttgattt-tgtccggaattcacaaca 71  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||  | |||||||||||||||    
T  31218561 ctactttcctttgctccacacatcatagtttatattggtgtgatttgagaccggaattcacaaca 31218625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 1746087 - 1746036
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||| || |||||||||||||| |||||||| ||||||||    
T  1746087 gttactactttcctttactccacacatcatagttcgtattggtgtgattttg 1746036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 18105944 - 18105893
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||    
T  18105944 gttactactttcctttgctctacacatcatagtttgtattagtgtgattttg 18105893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 3303539 - 3303497
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  3303539 gttaccactttcctttgctccacacatcatagtttgtattggt 3303497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 7493296 - 7493352
Alignment:
Q  13 ttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  7493296 ttcctttgctccacacatcatagttt-tattggtgtgattttgtcc-gaattcacaaca 7493352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 8154081 - 8154147
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttg-tccggaattcacaaca 71  Q
    ||||||||||||||| |||||||||||||||||| |||| || ||||||||  || ||||||||||||    
T  8154081 ttactactttcctttacttcacacatcatagttt-tattagtgtgattttgagcccgaattcacaaca 8154147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 27811578 - 27811632
Alignment:
Q  4 gttactactttcctttgcttcacacatc--atagtttgtattggtttgattttgt 56  Q
    |||||||||||||||| || ||||||||  ||||||||||||||| |||||||||    
T  27811578 gttactactttcctttcctccacacatcatatagtttgtattggtgtgattttgt 27811632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 2628039 - 2628081
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||| || |||||||||||    
T  2628039 gttactactttcctttgctccacacatcttactttgtattggt 2628081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 4734006 - 4734078
Alignment:
Q  4 gttactactttcctttgcttcacacatca-tagtttgtattggtttgattttg--tccggaattcacaacagtt 74  Q
    ||||||||||||||||||| ||||||||| | |||||||||||| | ||||||  ||| |||||||||||||||    
T  4734006 gttactactttcctttgctccacacatcattggtttgtattggtgtaattttgaatcc-gaattcacaacagtt 4734078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 4743096 - 4743054
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||    
T  4743096 gttaccactttcctttgctccacacattatagtttgtattggt 4743054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 43036722 - 43036764
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  43036722 gttactactttcctttgctccacacatcattttttgtattggt 43036764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 40321379 - 40321415
Alignment:
Q  8 ctactttcctttgcttcacacatcatagtttgtattg 44  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  40321379 ctactttcctttgctccacatatcatagtttgtattg 40321415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 16409779 - 16409846
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  16409779 gttactactttcctttgctccacacatcatactttgtattggtgtgattttgtacggaattcacaaca 16409846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 16649703 - 16649652
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  16649703 gttactactttcctttgctccacacatcatagtttgtattggtatgattttg 16649652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 13343360 - 13343433
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgt--ccggaattcacaacagttg 75  Q
    ||||||||||||||||||| |||||||||||||| ||||| || ||| |||||  |||||||||||||||||||    
T  13343360 gttactactttcctttgctccacacatcatagttcgtattagtgtgactttgttaccggaattcacaacagttg 13343433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 30182888 - 30182957
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||  | |||||||||||||||    
T  30182888 gttactactttcctttgctccacacatcatagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 36073911 - 36073842
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt-ttgattttgtccggaattcacaacag 72  Q
    |||| |||||||||||||| ||||||||||||||||||||||| | | |||||| |||||||||||||||    
T  36073911 gttattactttcctttgctccacacatcatagtttgtattggtgtggtttttgtacggaattcacaacag 36073842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 31183272 - 31183324
Alignment:
Q  3 agttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||||| |||||||||| |||||||||||| ||||||||    
T  31183272 agttactactttcctttgctccacacatcatggtttgtattggtgtgattttg 31183324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 5887303 - 5887252
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  5887303 gttactactttcctttgctccacatatcatagtttgtattggtgtgattttg 5887252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 30682791 - 30682749
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  30682791 gttactactttcctttgctccacacatcatagtttgtattggt 30682749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 39468417 - 39468375
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  39468417 gttactactttcctttgctccacacatcatagtttgtattggt 39468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 42428299 - 42428257
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  42428299 gttactactttcctttgctccacacatcatagtttgtattggt 42428257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 25413061 - 25413129
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttg--tccggaattcacaaca 71  Q
    |||||| ||||||||||| |||||||||||||| |||||||| ||||||||   |||||||||||||||    
T  25413061 ttactaatttcctttgctccacacatcatagttcgtattggtgtgattttgaaaccggaattcacaaca 25413129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 37439441 - 37439510
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagttt---gtattggtttgattttgtccggaattcacaaca 71  Q
    |||||||||| | |||||| |||||||||||||||   |||||||| ||||||||||||||||||||||||    
T  37439441 gttactactt-cttttgctccacacatcatagttttttgtattggtgtgattttgtccggaattcacaaca 37439510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 8565816 - 8565765
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||| |||| || ||||||||    
T  8565816 gttactactttcctttgctccacacatcatagtttatattagtgtgattttg 8565765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 9789090 - 9789039
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| || |||||    
T  9789090 gttactactttcctttgctccacacatcatactttgtattggtgtggttttg 9789039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 13240051 - 13240102
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||| || |||||||||||||||||||| || ||||||||    
T  13240051 gttactactttcctttactccacacatcatagtttgtattagtgtgattttg 13240102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 33831978 - 33832017
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtatt 43  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  33831978 gttactactttcctttgctccacacatcatagtttgtatt 33832017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 534058 - 534100
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  534058 gttactactttcctttgctccacacatcatagtttctattggt 534100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 3075618 - 3075576
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  3075618 gttattactttcctttgctccacacatcatagtttgtattggt 3075576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 19806662 - 19806704
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  19806662 gttactactttcctttgccccacacatcatagtttgtattggt 19806704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 28750524 - 28750482
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  28750524 gttactactttcctttgctccacacatcataatttgtattggt 28750482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 32637123 - 32637165
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  32637123 gttactactttcctttactccacacatcatagtttgtattggt 32637165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 18441510 - 18441438
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacagtt 74  Q
    ||||||||||||||||||| |||||||| || ||||||||||| || ||||  |  |||||||||||||||||    
T  18441510 gttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaattcacaacagtt 18441438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 42426104 - 42426065
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtatt 43  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  42426104 gttactactttcttttgctccacacatcatagtttgtatt 42426065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 538320 - 538362
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||| |||||||||||||| ||||||||||||||| |||||||    
T  538320 gttattactttcctttgctccacacatcatagtttatattggt 538362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 48143348 - 48143417
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  48143348 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 29999697 - 29999628
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||  | |||||||||||||||    
T  29999697 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 48893511 - 48893460
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  48893511 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 48893460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 56178504 - 56178453
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  56178504 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 56178453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 5369949 - 5369881
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||| || ||||||||||||||||||||||| |||||||  | |||||||||||||||    
T  5369949 ttactactttcctttactccacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 34570282 - 34570231
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  34570282 gttactactttcctttgctccacacatcatagtttatattggtgtgattttg 34570231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 45687055 - 45687004
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||||    
T  45687055 gttactactttcctttgctccatacatcatagtttgtattggtgtgattttg 45687004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 47038284 - 47038233
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||| | ||||||||||||||||||||||| ||||||||    
T  47038284 gttactactttcctttgttccacacatcatagtttgtattggtgtgattttg 47038233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 26175505 - 26175463
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  26175505 gttactactttcctttgctccacacatcatagtttgtattggt 26175463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 52467226 - 52467184
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  52467226 gttaccactttcctttgcttcacacatcatagtttgtattggt 52467184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 54199776 - 54199705
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacagtt 74  Q
    ||||||||||||||||||| || ||||||| |||||||||||| |||||||  |||| |||||||||||||||    
T  54199776 gttactactttcctttgctccatacatcatcgtttgtattggtgtgattttgagtcc-gaattcacaacagtt 54199705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 52082531 - 52082480
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  52082531 gttactactttcctttgttccacacatcataatttgtattggtgtgattttg 52082480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 12743797 - 12743755
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  12743797 gttactactttcctttgctccacacaacatagtttgtattggt 12743755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 31474447 - 31474512
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||| |||||| |||||||||| |||||||||||| |||||  |||| ||||||||||||    
T  31474447 ttactactttcatttgctacacacatcattgtttgtattggtgtgattgagtcc-gaattcacaaca 31474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 46147264 - 46147222
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  46147264 gttactactttcctttgctccacacatcatagtttgcattggt 46147222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 52095229 - 52095179
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||| | ||||| ||||||||||||||||| ||||||||    
T  52095229 ttactactttcctttgttccacacgtcatagtttgtattggtgtgattttg 52095179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 37740926 - 37740967
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  37740926 ttactactttcctgtgctccacacatcatagtttgtattggt 37740967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 5872117 - 5872166
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||  ||||||||||||| ||||||||    
T  5872117 gttactactttcctttgctccacacatc--agtttgtattggtgtgattttg 5872166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 9927324 - 9927285
Alignment:
Q  7 actactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  9927324 actactttcctttgctccacacatcatagtttatattggt 9927285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 13992159 - 13992112
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgat 51  Q
    ||||||||||||||||||| ||||||||||| || |||||||| ||||    
T  13992159 gttactactttcctttgctccacacatcatatttcgtattggtgtgat 13992112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 36463264 - 36463213
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||| ||||||||||| || |||||||||||||||||||| || ||||||||    
T  36463264 gttattactttcctttactccacacatcatagtttgtattagtgtgattttg 36463213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 12739422 - 12739380
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||| ||| || |||||||||||||||||||||||    
T  12739422 gttactactttcttttactccacacatcatagtttgtattggt 12739380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 29254793 - 29254842
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt 54  Q
    |||||||||||| |||||| |||||||||||||||||||| || |||||||    
T  29254793 gttactactttc-tttgctccacacatcatagtttgtattagtgtgatttt 29254842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 31495172 - 31495130
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| ||||||||||| || ||||||||    
T  31495172 gttactactttcctttgctccacacatcatatttcgtattggt 31495130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 9581583 - 9581652
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||  |||||||||||||||||    
T  9581583 gttactactttcctttgcttcacacatcatagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 9635992 - 9635923
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||  | |||||||||||||||    
T  9635992 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 22834875 - 22834824
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  22834875 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 22834824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 23197812 - 23197745
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||||||||||| |||| |||||| ||||||||||| || |||||| ||||||||||||||    
T  23197812 gttactactttcctttgctccacatatcatactttgtattggtgtggttttgtacggaattcacaaca 23197745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 23200005 - 23199938
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||||||||||| |||| |||||| ||||||||||| || |||||| ||||||||||||||    
T  23200005 gttactactttcctttgctccacatatcatactttgtattggtgtggttttgtacggaattcacaaca 23199938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 40734797 - 40734848
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  40734797 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 40734848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 7764765 - 7764834
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    |||||||||||||||| |||||||||||||||||||||||||| |  ||||  |||||||||||||||||    
T  7764765 gttactactttcctttacttcacacatcatagtttgtattggtgtagttttgagtccggaattcacaaca 7764834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 29682657 - 29682729
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtc---cggaattcacaacagtt 74  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||| |    |||||||||||||||||    
T  29682657 ttactactttcctttgctccacacatcatagtttgtattggtgtgattttttgtgtcggaattcacaacagtt 29682729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 761144 - 761193
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt 53  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  761144 gttactactttcctttgctccacacatcatagtttgtattggtgtgattt 761193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 45095463 - 45095532
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaacagt 73  Q
    |||||||||||||||||||  |||||||||||||||||||| | |||||||||   ||||||||||||||    
T  45095463 gttactactttcctttgctctacacatcatagtttgtattgatgtgattttgtatagaattcacaacagt 45095532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 40735682 - 40735750
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg-tccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||||| | | ||||||||||||    
T  40735682 gttactactttcctttgctccacacatcataatttgtattggtgtgattttgataccgaattcacaaca 40735750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 5260191 - 5260140
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  5260191 gttactactttcctttgctccacacatcatagttcgtattggtttgactttg 5260140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 9634689 - 9634620
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacag 72  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||||||  | ||||||||||||||||    
T  9634689 gttactactttcctttgctccaca-atcatagtttgtattggtgtgattttgagaccggaattcacaacag 9634620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 9666338 - 9666287
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  9666338 gttactactttcctttgctccacagatcatagtttgtattggtgtgattttg 9666287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 5258012 - 5257943
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||| |||  | |||||||||||||||    
T  5258012 gttactactttcctttgctccacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 5257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 7762566 - 7762608
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  7762566 gttactactttcctttgctccacacatcatagtttgtattggt 7762608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 19683756 - 19683687
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||| |||  | |||||||||||||||    
T  19683756 gttactactttcctttgctccaaacatcatagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 29196258 - 29196216
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  29196258 gttactactttcctttgctccacacatcatagtttgtattggt 29196216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 39153233 - 39153191
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  39153233 gttactactttcctttgctccacacatcatagtttgtattggt 39153191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 31314739 - 31314791
Alignment:
Q  3 agttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||| |||||||||||||| || |||||||||||||||||||| ||||||||    
T  31314739 agttattactttcctttgctccatacatcatagtttgtattggtgtgattttg 31314791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 2074950 - 2074900
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  2074950 gttactactttcctttgctccacacatcatagttt-tattggtgtgattttg 2074900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 16499314 - 16499365
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||| ||||||||||||| | ||||||||    
T  16499314 gttactactttcctttgctccacacattatagtttgtattgatgtgattttg 16499365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 29813360 - 29813403
Alignment:
Q  3 agttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  29813360 agttactacttttctttgctccacacatcatagtttgtattggt 29813403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 51399118 - 51399165
Alignment:
Q  8 ctactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||    
T  51399118 ctactttcctttgctccatacatcatagtttgtattggtatgattttg 51399165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 5236324 - 5236274
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||| | || ||||||||||||||||||||||| ||||||||    
T  5236324 ttactactttcctgtactccacacatcatagtttgtattggtgtgattttg 5236274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 23410200 - 23410160
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattg 44  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  23410200 gttactactttcctttgatccacacatcatagtttgtattg 23410160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 27305585 - 27305536
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  27305585 gttactactttcctttgctccacacatcatagtt--tattggtgtgattttg 27305536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 37408759 - 37408799
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattg 44  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  37408759 gttactactttcctttgctccacacatcatattttgtattg 37408799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 7779869 - 7779802
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||| ||| ||||||||| |||||||| || || |||||||| || |||||| ||||||||||||||    
T  7779869 gttaccactctcctttgctccacacatcttacttcgtattggtgtggttttgtacggaattcacaaca 7779802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 37406989 - 37407040
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||| |||||| |||| ||| ||||    
T  37406989 gttactactttcctttgctccacacatcatattttgtagtggtgtgactttg 37407040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 44700352 - 44700301
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||| ||||||| ||  ||||||||||||||||||| ||||||||    
T  44700352 gttactacttttctttgctccatgcatcatagtttgtattggtgtgattttg 44700301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 801390 - 801432
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| ||||||||||| || ||||||||    
T  801390 gttactactttcctttgctccacacatcatatttcgtattggt 801432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 23391781 - 23391739
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||| ||||||||||| || |||||||||||||||||||||||    
T  23391781 gttattactttccttttctccacacatcatagtttgtattggt 23391739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 29811168 - 29811210
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| |||| |||||| |||||||||||    
T  29811168 gttactactttcctttgctccacaaatcatattttgtattggt 29811210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 32891390 - 32891424
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagttt 38  Q
    ||||||||||||||||||| |||||||||||||||    
T  32891390 gttactactttcctttgctccacacatcatagttt 32891424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 43403586 - 43403530
Alignment:
Q  18 ttgcttcacacatcatagtttgtattggtttga---ttttgtccggaattcacaaca 71  Q
    ||||| ||||||||||||||||||||||| |||   ||| |||||||||||||||||    
T  43403586 ttgctccacacatcatagtttgtattggtgtgaaattttagtccggaattcacaaca 43403530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 114903 - 114971
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagttt-gtattggtttgattttgtccggaattcacaaca 71  Q
    |||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  114903 gttattactttcctttgctccacacatcatagttttgtattggtgtgattttgtccggaattcacaaca 114971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 33160219 - 33160150
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattt--tgtccggaattcacaaca 71  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  33160219 gttactattttcctttgctccacacatcatagtttgtattggtatgattttatgtccggaattcacaaca 33160150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 2171395 - 2171317
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacagttgcatat 80  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||| |||  | ||||||||||||||| || |||||    
T  2171395 gttactactttcctttgctccacacatcatagttcgtattggtgtgactttgagaccggaattcacaacactttcatat 2171317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 5408938 - 5408887
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  5408938 gttactactttcctttgctccacacatcatagtttgtattggtgtgactttg 5408887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 5413263 - 5413212
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  5413263 gttactactttcctttgctccacacatcatagtttgtattggtgtgactttg 5413212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 9182899 - 9182856
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtt 47  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  9182899 gttactactttcctttgctccacacatcatagtttgtattggtt 9182856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 26954159 - 26954108
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  26954159 gttactactttcttttgctccacacatcatagtttgtattggtgtgattttg 26954108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 28137279 - 28137228
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  28137279 gttactactttcctttgctccacacgtcatagtttgtattggtgtgattttg 28137228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 31404542 - 31404469
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttga--ttttgtccggaattcacaacagttgc 76  Q
    |||||| ||||||||||| |||||||||||||| |||||||  |||  ||||||||| ||||||||||||||||    
T  31404542 ttactattttcctttgctccacacatcatagttcgtattggagtgattttttgtccgaaattcacaacagttgc 31404469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 412389 - 412456
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||| || |||||||| || ||| ||  |||||||||||||    
T  412389 gttactactttcctttgctccacacatcatacttggtattggtgtggtttcgttaggaattcacaaca 412456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 3038795 - 3038744
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||| ||||||||||||||  |||||||||||||||||||||| ||||||||    
T  3038795 gttattactttcctttgctcgacacatcatagtttgtattggtctgattttg 3038744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 16452196 - 16452145
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||| || |||||||||||||| |||||||| ||||||||    
T  16452196 gttactactttcctttactccacacatcatagttcgtattggtgtgattttg 16452145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 5406071 - 5406002
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||| |||| || ||||||||||||||||||||||| ||| |||  | |||||||||||||||    
T  5406071 gttactacttttctttactccacacatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 5410396 - 5410327
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||||| |||| || ||||||||||||||||||||||| ||| |||  | |||||||||||||||    
T  5410396 gttactacttttctttactccacacatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 22963568 - 22963508
Alignment:
Q  13 ttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    |||||| ||| ||||||||||||||||||||||| |||||||  ||| |||||||||||||    
T  22963568 ttccttagctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 22963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 23824825 - 23824885
Alignment:
Q  13 ttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    |||||| ||| ||||||||||||||||||||||| |||||||  ||| |||||||||||||    
T  23824825 ttccttagctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 23824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 30834402 - 30834351
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||| ||||||||||| ||||||||||| || |||||||| ||||||||    
T  30834402 gttactattttcctttgctccacacatcatatttcgtattggtgtgattttg 30834351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 3072625 - 3072583
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| ||||||||||| || ||||||||    
T  3072625 gttactactttcctttgctccacacatcatatttcgtattggt 3072583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 50169083 - 50169031
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgt 56  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  50169083 gttactactttcatttgcttcacacatcatagtttgtattggtgtgattttgt 50169031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 834038 - 833987
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  834038 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 833987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 8550652 - 8550601
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  8550652 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 8550601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 49918650 - 49918701
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  49918650 gttactactttcctttgctccacacatcatagtttgtattggtgtgattttg 49918701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 51765699 - 51765766
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||| || |||||||| || |||||| ||||||||||||||    
T  51765699 gttactactttcctttgctccacacatcatatttcgtattggtgtggttttgtacggaattcacaaca 51765766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 20762968 - 20763037
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    |||| |||||||||||||| ||||||||||||||||||||||| |||||||  | |||||||||||||||    
T  20762968 gttaatactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 40122069 - 40122018
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  40122069 gttactactttcctttgctccacgcatcatagtttgtattggtgtgattttg 40122018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 45644226 - 45644175
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  45644226 gttactactttcctttgctccacacatcatagtttgtatttgtgtgattttg 45644175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 50167048 - 50166997
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  50167048 gttactactttcctttgctccacacatcatagtttgttttggtgtgattttg 50166997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 3157165 - 3157205
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattg 44  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  3157165 gttactactttcctttgctccacacatcatagtttgtattg 3157205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 3189644 - 3189696
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgt 56  Q
    ||||||||||||||||||| || |||||||||||| ||||||| |||||||||    
T  3189644 gttactactttcctttgctccagacatcatagtttatattggtgtgattttgt 3189696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 3198461 - 3198513
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgt 56  Q
    ||||||||||||||||||| || |||||||||||| ||||||| |||||||||    
T  3198461 gttactactttcctttgctccagacatcatagtttatattggtgtgattttgt 3198513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 3207300 - 3207352
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgt 56  Q
    ||||||||||||||||||| || |||||||||||| ||||||| |||||||||    
T  3207300 gttactactttcctttgctccagacatcatagtttatattggtgtgattttgt 3207352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 3846989 - 3846938
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||| || |||||||||||||||||||| || ||||||||    
T  3846989 gttactactttcctttactccacacatcatagtttgtattagtatgattttg 3846938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 13316219 - 13316149
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacagt 73  Q
    |||||||||||||||||| ||||||| ||| || |||||||| |||||||  | |||||||||||||||||    
T  13316219 ttactactttcctttgctccacacattatatttcgtattggtgtgattttgagaccggaattcacaacagt 13316149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 13659219 - 13659168
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||| ||||||||||||| | ||||||||    
T  13659219 gttactactttcctttgctccacacattatagtttgtattgatgtgattttg 13659168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 37503426 - 37503379
Alignment:
Q  8 ctactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||||    
T  37503426 ctactttcctttactccacacatcatagtttgtattggtgtgattttg 37503379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 40282682 - 40282749
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||| ||| ||||||||| |||||||||||||||| |||||| || ||| |||||| ||||||||||    
T  40282682 gttaccactctcctttgctccacacatcatagtttgcattggtgtggtttcgtccgggattcacaaca 40282749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 4552517 - 4552475
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  4552517 gttactactttcctttacttcacgcatcatagtttgtattggt 4552475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 10925523 - 10925573
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    |||||||||||||||||| |||||| |||||||||||||| | ||||||||    
T  10925523 ttactactttcctttgctccacacaacatagtttgtattgttgtgattttg 10925573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 13137849 - 13137807
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  13137849 gttactactttcctttgctccacacatcataatttgtattggt 13137807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 28223290 - 28223248
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  28223290 gttactactttcgtttgctccacacatcatagtttgtattggt 28223248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 28265425 - 28265376
Alignment:
Q  6 tactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||| |||||||| || ||||||||||||||||||||||| ||||||||    
T  28265425 tactattttcctttactccacacatcatagtttgtattggtgtgattttg 28265376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 15381122 - 15381178
Alignment:
Q  72 gttgcatatgcttcaagcattctcttctttaagctggattgataatttgtacgaaag 128  Q
    ||||||||||||||||| ||||||||  |||||||| ||||||||||| ||| ||||    
T  15381122 gttgcatatgcttcaaggattctctttgttaagctgcattgataatttatacaaaag 15381178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 196778 - 196727
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||| ||| ||||    
T  196778 gttactattttcctttgctccacacatcataatttgtattggtgtgaatttg 196727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 30476315 - 30476273
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||| || ||||||| |||||||||||||||    
T  30476315 gttactactttcctttactccacacattatagtttgtattggt 30476273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 37559733 - 37559691
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    ||||||||||||||||||| || |||||||||||| |||||||    
T  37559733 gttactactttcctttgctccagacatcatagtttatattggt 37559691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 1833808 - 1833879
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacagtt 74  Q
    ||||| |||||||||| || |||| |||||||||||||||||| |||| ||  |||| |||||||||||||||    
T  1833808 gttacgactttcctttactccacagatcatagtttgtattggtgtgatattgagtcc-gaattcacaacagtt 1833879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 11027 - 10960
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||||||||||| |||| |||||| ||||||||||| || |||||| ||||||||||||||    
T  11027 gttactactttcctttgctccacatatcatactttgtattggtgtggttttgtacggaattcacaaca 10960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 8601 - 8534
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttgtccggaattcacaaca 71  Q
    ||||||||||||||||||| |||  |||||| ||||||||||| || |||||| | ||||||||||||    
T  8601 gttactactttcctttgctccacgtatcatactttgtattggtgtggttttgtacagaattcacaaca 8534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 11866 - 11944
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaacagttgcatat 80  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||| |||  | ||||||||||||||| || |||||    
T  11866 gttactactttcctttgctccacacatcatagttcgtattggtgtgactttgagaccggaattcacaacactttcatat 11944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 148980 - 148929
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| ||||||| ||||||||||||| | ||||||||    
T  148980 gttactactttcctttgctccacacattatagtttgtattgatgtgattttg 148929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 434834 - 434885
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgattttg 55  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||| ||||    
T  434834 gttactactttcctttgctccacacatcatagttcgtattggtgtgactttg 434885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 20283 - 20241
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  20283 gttactaccttcctttgctccacacatcatagtttgtattggt 20241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 1369 - 1328
Alignment:
Q  5 ttactactttcctttgcttcacacatcatagtttgtattggt 46  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  1369 ttactactttcctttgctccacacatcatagattgtattggt 1328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 1216 - 1285
Alignment:
Q  4 gttactactttcctttgcttcacacatcatagtttgtattggtttgatttt--gtccggaattcacaaca 71  Q
    ||||||||| ||||||| | |||||||||||||| |||||||| ||| |||  | |||||||||||||||    
T  1216 gttactactatcctttgttccacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University