View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11605_low_6 (Length: 413)

Name: NF11605_low_6
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11605_low_6
NF11605_low_6
[»] chr8 (4 HSPs)
chr8 (20-396)||(39087363-39087738)
chr8 (142-217)||(8361216-8361291)
chr8 (142-217)||(25091397-25091472)
chr8 (151-215)||(4931099-4931162)
[»] scaffold0229 (1 HSPs)
scaffold0229 (142-217)||(25493-25568)
[»] chr7 (3 HSPs)
chr7 (142-217)||(12976995-12977070)
chr7 (142-217)||(12982453-12982528)
chr7 (142-217)||(18293104-18293179)
[»] chr6 (3 HSPs)
chr6 (142-217)||(4849804-4849879)
chr6 (148-215)||(15873527-15873594)
chr6 (148-202)||(21057853-21057907)
[»] chr4 (2 HSPs)
chr4 (148-215)||(13915871-13915938)
chr4 (142-217)||(14249866-14249941)
[»] chr1 (1 HSPs)
chr1 (142-217)||(1365185-1365260)
[»] chr3 (2 HSPs)
chr3 (142-217)||(38357066-38357141)
chr3 (148-215)||(35684505-35684572)


Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Complemental strand, 39087738 - 39087363
Alignment:
Q  20 agagaaggcagataaaccacaatcaacttcgggcagcataaaatctgaggcagcacaaaaggtagggaatcaatcgtccagttcaaagagcacacccatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087738 agagaaggcagataaaccacaatcaacttcgggcagcataaaatctgaggcagcacaaaaggtagggaatcaatcgtccagttcaaagagcacacccatc 39087639  T
Q  120 tcaaataagccagccaggaagcgcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatcttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39087638 tcaaataagccagccaggaagcgcattacacctattgcaattgatccatgatttt-caatgccagagaagttccattaacgtccgcccgtgtacatcttt 39087540  T
Q  220 tttgtgcggctaacatttccaaaacatcccccctcttgttgttccctgttttggtttacatattctgtaatatagattacattataatatttatcatctt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087539 tttgtgcggctaacatttccaaaacatcccccctcttgttgttccctgttttggtttacatattctgtaatatagattacattataatatttatcatctt 39087440  T
Q  320 tagagtaaacaatcttcattttgaagatttccttttggacctcttgttttagtcataggttgcctactttcctagtt 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39087439 tagagtaaacaatcttcattttgaagatttccttttggacctcttgttttagtcataggtttcctactttcctagtt 39087363  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 8361291 - 8361216
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  8361291 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 8361216  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 25091472 - 25091397
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  25091472 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 25091397  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 4931162 - 4931099
Alignment:
Q  151 ctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 215  Q
    |||||||||||| || ||||| ||||||| ||| |||| ||||||||||||| ||| ||||||||    
T  4931162 ctattgcaattggtc-atgatatttcaataccatagaaattccattaacgtcagcctgtgtacat 4931099  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 25493 - 25568
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || ||||| ||||||||| |||||| || |||||||||| ||| ||||||||||    
T  25493 gcattgcacctattgcaattggtcaatgatatttcaatgcaagagaaatttcattaacgtcagcctgtgtacatct 25568  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 12976995 - 12977070
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  12976995 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 12977070  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 12982453 - 12982528
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  12982453 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 12982528  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 18293179 - 18293104
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| |||| |||||||||| || ||||| ||||||||||| |||| ||||| |||||||  || ||||||||||    
T  18293179 gcattgcacccattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcatcctgtgtacatct 18293104  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 4849804 - 4849879
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  4849804 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 4849879  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 15873527 - 15873594
Alignment:
Q  148 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 215  Q
    ||||||||||||||| || ||||| ||||||||||| | || ||||||||||||| ||| ||||||||    
T  15873527 cacctattgcaattggtcaatgatatttcaatgccataaaaattccattaacgtcagcctgtgtacat 15873594  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 21057907 - 21057853
Alignment:
Q  148 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtc 202  Q
    ||||||||||||||| || ||||| ||||||||||| |||| |||||||||||||    
T  21057907 cacctattgcaattggtcaatgatatttcaatgccatagaaattccattaacgtc 21057853  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 13915871 - 13915938
Alignment:
Q  148 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 215  Q
    ||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||| ||| ||||||||    
T  13915871 cacctattgcaattggtcaatgatatttcaatgccatagaaattccattaacgtcagcctgtgtacat 13915938  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 14249866 - 14249941
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  14249866 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 14249941  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 1365260 - 1365185
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || ||||| ||||||||| |||||| || |||||||||| ||| ||||||||||    
T  1365260 gcattgcacctattgcaattggtcaatgatatttcaatgcaagagaaatttcattaacgtcagcctgtgtacatct 1365185  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 38357141 - 38357066
Alignment:
Q  142 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 217  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  38357141 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 38357066  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 35684505 - 35684572
Alignment:
Q  148 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 215  Q
    ||||||||||||||| || ||||| ||||||| ||| |||| ||||||||||||| ||  ||||||||    
T  35684505 cacctattgcaattggtcaatgatatttcaataccatagaaattccattaacgtcagcatgtgtacat 35684572  T

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