View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11605_low_7 (Length: 355)

Name: NF11605_low_7
Description: NF11605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11605_low_7
NF11605_low_7
[»] chr4 (2 HSPs)
chr4 (208-337)||(11120435-11120564)
chr4 (1-125)||(11120647-11120770)
[»] chr5 (6 HSPs)
chr5 (28-108)||(42125886-42125967)
chr5 (210-256)||(34230632-34230678)
chr5 (210-256)||(34238687-34238733)
chr5 (211-256)||(42119138-42119183)
chr5 (208-255)||(42130953-42131000)
chr5 (210-244)||(42125742-42125776)
[»] chr6 (2 HSPs)
chr6 (28-82)||(25520653-25520707)
chr6 (216-256)||(25520846-25520886)
[»] chr3 (2 HSPs)
chr3 (208-256)||(8525203-8525251)
chr3 (30-79)||(8525377-8525426)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 208 - 337
Target Start/End: Complemental strand, 11120564 - 11120435
Alignment:
Q  208 gccatcacgatgagagctctgctttgcttcagttcaagtcctccttcacgttgttatcttctacctcttttggttattgcactggtaatgaaccttcaac 307  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  11120564 gccatcacgatgagagctttgctttgcttcagttcgagtcctccttcacgttattatcttctacctcttttgattattgcaccggtaatgaaccttcaac 11120465  T
Q  308 aataacatggaaaaatgggactgattgctg 337  Q
    || |||||||||||||||||||||||||||    
T  11120464 aacaacatggaaaaatgggactgattgctg 11120435  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 11120770 - 11120647
Alignment:
Q  1 aattaaagtttgcctttgaaaatttgtgctataaatatatacgttgtgttccttaccatttcatccacacttacttttctatagcttttcttctttcatt 100  Q
    |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11120770 aattaaagtttgcctttgaaaatttgtgctataaatattttc-ttgtgttccttaccatttcatccacacttatttttctatagcttttcttctttcatt 11120672  T
Q  101 taaaccatatagagtttcaacaaaa 125  Q
    ||||||||||| |||||| ||||||    
T  11120671 taaaccatatacagtttctacaaaa 11120647  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 42125967 - 42125886
Alignment:
Q  28 gctataaatatatacgttgtgttccttaccatttcatccacacttacttttctatagcttttc-ttctttcatttaaaccat 108  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||||| | | ||||| |||||| | |||||||||    
T  42125967 gctataaatatttaggttgtgtttcttaccatttcatccacacttacttttcttttgattttctttctttgagttaaaccat 42125886  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 34230632 - 34230678
Alignment:
Q  210 catcacgatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  34230632 catcatgatgagagctttgctttgcttcagttcaagtcctccttcac 34230678  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 34238687 - 34238733
Alignment:
Q  210 catcacgatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  34238687 catcatgatgagagctttgctttgcttcagttcaagtcctccttcac 34238733  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 42119183 - 42119138
Alignment:
Q  211 atcacgatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||    
T  42119183 atcatgatgagagctctgctctgcttcagttcaagtcctccttcac 42119138  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 42131000 - 42130953
Alignment:
Q  208 gccatcacgatgagagctctgctttgcttcagttcaagtcctccttca 255  Q
    |||||||  |||| |||||||||||||||||||||||||| |||||||    
T  42131000 gccatcataatgacagctctgctttgcttcagttcaagtcatccttca 42130953  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 42125776 - 42125742
Alignment:
Q  210 catcacgatgagagctctgctttgcttcagttcaa 244  Q
    ||||| |||||||||||||||||||||||||||||    
T  42125776 catcatgatgagagctctgctttgcttcagttcaa 42125742  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 25520653 - 25520707
Alignment:
Q  28 gctataaatatatacgttgtgttccttaccatttcatccacacttacttttctat 82  Q
    ||||||||||| |||||||||| ||||  ||||||||||||||||||||||||||    
T  25520653 gctataaatatttacgttgtgtcccttggcatttcatccacacttacttttctat 25520707  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 25520846 - 25520886
Alignment:
Q  216 gatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    ||||||||||||||| |||||||||| || |||||||||||    
T  25520846 gatgagagctctgctctgcttcagtttaaatcctccttcac 25520886  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 8525251 - 8525203
Alignment:
Q  208 gccatcacgatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    |||||||  |||||||||||||||||||||| |||||||| ||||||||    
T  8525251 gccatcattatgagagctctgctttgcttcatttcaagtcatccttcac 8525203  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 8525426 - 8525377
Alignment:
Q  30 tataaatatatacgttgtgttccttaccatttcatccacacttacttttc 79  Q
    |||||||||| |||||||||||||||  || ||||||||||||| |||||    
T  8525426 tataaatatagacgttgtgttccttaaaatatcatccacacttagttttc 8525377  T

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