View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11606_high_7 (Length: 242)
Name: NF11606_high_7
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11606_high_7 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4341939 - 4341714
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4341939 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaatttcgggactaatgccaaggtgagttcctt |
4341840 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4341839 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
4341740 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4341739 |
agcatgactatcatgccatatgaatg |
4341714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 42785367 - 42785592
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
42785367 |
tattttggaaaatggactatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgtaatttcgggactaatgccaaggtgagttcctt |
42785466 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
42785467 |
tagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattagaccatttttatgatttcttgtcttttgtgca |
42785566 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
42785567 |
agcatgactactatgccatatgaatg |
42785592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 21958048 - 21958180
Alignment:
| Q |
92 |
gagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgcc |
191 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||| |||| | |
|
|
| T |
21958048 |
gagttcctttagcttagagcccacctttggggatcagttatgattatgttatattattgagataacatgaataattagaccttttttatgatttcttgtc |
21958147 |
T |
|
| Q |
192 |
gattgtgcaagcatgactatcatgccatatgaa |
224 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
21958148 |
ttttgtgcaagcatgactattatgccatatgaa |
21958180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 19803681 - 19803542
Alignment:
| Q |
87 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| | |
|
|
| T |
19803681 |
aaggtgagttcctttagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
19803582 |
T |
|
| Q |
187 |
ttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
19803581 |
ttgtcttttgtgcaagcatgactactatgccatatgaatg |
19803542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3078225 - 3078295
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaat |
71 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||| | ||||| ||||||||||||||| ||||| |||| |
|
|
| T |
3078225 |
tattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagctgctttcaat |
3078295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3081731 - 3081672
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataag |
60 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||| | ||||| ||||||||||||||| |
|
|
| T |
3081731 |
tattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataag |
3081672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21957957 - 21958015
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataag |
60 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||||||| || ||| |||||||| |
|
|
| T |
21957957 |
tattttggaaaatgg-ttatgaagttttggagatagcaaaagctgcagattatggataag |
21958015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4853233 - 4853016
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4853233 |
tattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctt |
4853134 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4853133 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataacatgaataattagaccatttttatgattacttgccgattgtgca |
4853034 |
T |
|
| Q |
201 |
agcatgactatcatgcca |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4853033 |
agcatgactatcatgcca |
4853016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2894014 - 2894239
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
2894014 |
tattttggaaaatggactatggagttttggagctagtaaaagctgcaaattgtggataagttgcttgtaatttcgggactaatgccaaggtgagttcctt |
2894113 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
2894114 |
tagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattagaccatttttatgatttcttgtcttttgtgca |
2894213 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
2894214 |
agcatgactactatgccatatgaatg |
2894239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 81 - 226
Target Start/End: Complemental strand, 1506695 - 1506550
Alignment:
| Q |
81 |
aatgccaaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttat |
180 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
1506695 |
aatgctaaggtgagttcctttagcttagaacccacctttggggatcaattataattatgttagattattgagataacatgaataattagaccatttttat |
1506596 |
T |
|
| Q |
181 |
gattacttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1506595 |
gattacttgccgattgtgcaagcatgactatcataccatatgaatg |
1506550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 13713829 - 13713690
Alignment:
| Q |
81 |
aatgccaaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttat |
180 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
13713829 |
aatgctaaggtgagttcctttcgcttataacccacctttggggatcaattatgattatgttagattattgagataatatgaataattaaaccatttttat |
13713730 |
T |
|
| Q |
181 |
gattacttgccgattgtgcaagcatgactatcatgccata |
220 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
13713729 |
gattacctgccgattgtgcaagcatgactatcataccata |
13713690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 14191064 - 14190926
Alignment:
| Q |
88 |
aggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattact |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
14191064 |
aggtgagttcctttagcttagaacccacctttggagatcgattatgattatgctagattattgagataacatgaataattagaccatttttatgattact |
14190965 |
T |
|
| Q |
188 |
tgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
14190964 |
cgccttttgtgcaagcatgactattatgccatatgaatg |
14190926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 5577059 - 5577169
Alignment:
| Q |
87 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattac |
186 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |||||| |
|
|
| T |
5577059 |
aaggtgagttcctttagcttagaatccacctttggggatcaattatgattatgttagattattgacataacatgaataattagaccatttttaggattac |
5577158 |
T |
|
| Q |
187 |
ttgccgattgt |
197 |
Q |
| |
|
|||||||||| |
|
|
| T |
5577159 |
atgccgattgt |
5577169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6734925 - 6734990
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgctt |
66 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| | ||||| ||||||| ||||||| ||||| |
|
|
| T |
6734925 |
tattttggaaaaatgattatggagttttggagatagaagaagctgcaaattggggataagctgctt |
6734990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14114214 - 14114431
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14114214 |
tattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctt |
14114313 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14114314 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataacatgaacaattagaccatttttatgattactttccgattgtgca |
14114413 |
T |
|
| Q |
201 |
agcatgactatcatgcca |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14114414 |
agcatgactatcatgcca |
14114431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 51844922 - 51844783
Alignment:
| Q |
87 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| | | ||||||||||| |
|
|
| T |
51844922 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatattagattattgagataacatgaataattagatcctctttatgattac |
51844823 |
T |
|
| Q |
187 |
ttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51844822 |
ttgccgattgtgcaagcatgactatcatgccatatgaatg |
51844783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 15089074 - 15089004
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaat |
71 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||| | ||||| ||||||||||||||||||||| |||| |
|
|
| T |
15089074 |
tattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagttgctttcaat |
15089004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22211682 - 22211612
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaat |
71 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||| | ||||| ||||||||||||||||||||| |||| |
|
|
| T |
22211682 |
tattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagttgctttcaat |
22211612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 23802 - 23573
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
23802 |
tattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggagagttactt |
23703 |
T |
|
| Q |
101 |
ta----gcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattg |
196 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
23702 |
taattagcttagaacccacatttggggatcaattatgattatgttagattatcgagataacatgaataattagaccatttttatgattacttgccaattg |
23603 |
T |
|
| Q |
197 |
tgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
||||||||| ||||||||| |||||||||| |
|
|
| T |
23602 |
tgcaagcataactatcatgtcatatgaatg |
23573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28223304 - 28223075
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
28223304 |
tattttggaaaatggattatggagttttggagctagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggagagttactt |
28223205 |
T |
|
| Q |
101 |
ta----gcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattg |
196 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
28223204 |
taattagcttagaacccacatttggggatcaattatgattatgttagattatcgagataacatgaataattagaccatttttatgattacttgccaattg |
28223105 |
T |
|
| Q |
197 |
tgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
||||||||| ||||||||| |||||||||| |
|
|
| T |
28223104 |
tgcaagcataactatcatgtcatatgaatg |
28223075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29934014 - 29934239
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
29934014 |
tattttggaaaatggattatggatttttggagctagcaaaagctgcaaattgtggataagctgcttgtaatttcgggactaatgccaaggtgagttcctt |
29934113 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
29934114 |
tagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattagaccatttttatgatttcttgtcttttgtgca |
29934213 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
29934214 |
agcatgactactatgccatatgaatg |
29934239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33295598 - 33295822
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33295598 |
tattttggaaaatggattatggagttttggagctagtaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctt |
33295697 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||| || |||||| |||||| ||| |||||||||||| ||||||||||||||||| |||| || |
|
|
| T |
33295698 |
tagcttagaacccacctttggagatcgattatgattatgctacattattaagataacatgaataattagacca-ttttatgattacttgccttttgtaca |
33295796 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
| |||| || | |||||||||||||| |
|
|
| T |
33295797 |
aacatgtctgttatgccatatgaatg |
33295822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 5249438 - 5249655
Alignment:
| Q |
9 |
aaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctttagcttag |
108 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||| ||||| |||||||| ||| |||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
5249438 |
aaaatggattatgaagttttggagttaacaaaagctgaaaattatggataagctgcctgcaatctcgggactaatgccaaggtgagttcctttagcttag |
5249537 |
T |
|
| Q |
109 |
aacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgcaagcatgac |
208 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
5249538 |
aacccacctttggggatcgattatgaatatgttagattattgagataacatcaataattagaccatttttatgattacttgtcttttatgcaagcatgac |
5249637 |
T |
|
| Q |
209 |
tatcatgccatatgaatg |
226 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
5249638 |
tattatgccatatgaatg |
5249655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 81 - 226
Target Start/End: Original strand, 26619924 - 26620069
Alignment:
| Q |
81 |
aatgccaaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttat |
180 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
26619924 |
aatgctaaggtgagttcctttagcttagaacccacctttggggatcaattataattatgttagattattgagataacatgaataattagaccatttttat |
26620023 |
T |
|
| Q |
181 |
gattacttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26620024 |
gattacttgccgattgtgcaagcatgactatcataccatatgaatg |
26620069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 81 - 226
Target Start/End: Original strand, 26725837 - 26725982
Alignment:
| Q |
81 |
aatgccaaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttat |
180 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
26725837 |
aatgctaaggtgagttcctttagcttagaacccacctttggggatcaattataattatgttagattattgagataacatgaataattagaccatttttat |
26725936 |
T |
|
| Q |
181 |
gattacttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26725937 |
gattacttgccgattgtgcaagcatgactatcataccatatgaatg |
26725982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 8520357 - 8520213
Alignment:
| Q |
82 |
atgccaaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
8520357 |
atgccaaggtgagttcctttagcttagaacgcacctttggggatcgattatgattaggttagattattgagataacataaataattagaccatttttatg |
8520258 |
T |
|
| Q |
182 |
attacttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
||| ||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
8520257 |
attttttgacttttgtgcaagcatgactattatgccatatgaatg |
8520213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 34255006 - 34255145
Alignment:
| Q |
87 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| | |
|
|
| T |
34255006 |
aaggtgagttcctttagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
34255105 |
T |
|
| Q |
187 |
ttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
34255106 |
ttgtcttttgtgcaagcatgactactatgccatatgaatg |
34255145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 28145620 - 28145540
Alignment:
| Q |
145 |
ttattgagataatatggataattagaccatttttatgattacttgccgattgtgcaagcatgactatcatgccatatgaat |
225 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28145620 |
ttattgagataacatgaataattagaccatttttagaattactcgccgattgtgcaagcatgactatcatgccatatgaat |
28145540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 28146315 - 28146260
Alignment:
| Q |
87 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgtta |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28146315 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgtta |
28146260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 5130569 - 5130618
Alignment:
| Q |
177 |
ttatgattacttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5130569 |
ttatgattacttgccgattgtgcaagcatgactatcataccatatgaatg |
5130618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 5130521 - 5130577
Alignment:
| Q |
81 |
aatgccaaggtgagttcctttagcttagaacccacctttggggatcaattatgatta |
137 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5130521 |
aatgctaaggtgagttcctttagcttagagcccacatttggggatcaattatgatta |
5130577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2742786 - 2743011
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
2742786 |
tattttggaaaatggattatggatttttggagctagcaaaagctgcaaattgtggataagctgcttgaaatttcgggactaatgccaaggtgagttcctt |
2742885 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
2742886 |
tagcttagaacccacctttgggaatggatcatgattatgttagtttaatgagataacatgaataattagaccatttttatgatttcttgtcttttgtgca |
2742985 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
2742986 |
agcatgactactatgccatatgaatg |
2743011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2696456 - 2696544
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaag |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
2696456 |
tattttggaaaatggattatggagttttggagttagcaaaagctgaaaattgtgaataagctgcttgcaatttcgggactaatgccaag |
2696544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 31342956 - 31343056
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgc-ttgcaa-ttttgggactaatgccaaggtgagttcc |
98 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||| ||| | | ||| |||||||||||| |||||| |||||||| |||| ||||||||||||| |
|
|
| T |
31342956 |
tattttggaaaagcgattatagagttttggagatagcagaagttggagattttggataagttgctttgcaatttttgggagtaat-tcaaggtgagttcc |
31343054 |
T |
|
| Q |
99 |
tt |
100 |
Q |
| |
|
|| |
|
|
| T |
31343055 |
tt |
31343056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5558611 - 5558386
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5558611 |
tattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattttggataagctgcttgcaatttcgggactaatgccaaggtgagttcctt |
5558512 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
||| |||||||||||||||||| || |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| |||| | ||||||| |
|
|
| T |
5558511 |
tagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgca |
5558412 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||| ||| |||||||||| |
|
|
| T |
5558411 |
agcatgactactatgtcatatgaatg |
5558386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 20809915 - 20810066
Alignment:
| Q |
87 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattatt------------gagataatatggataattagaccat |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
20809915 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattatgttagatattgagataacatgaataattagaccat |
20810014 |
T |
|
| Q |
175 |
ttttatgattacttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810015 |
ttttatgattacctgccgattgtgcaagcatgactatcatgccatatgaatg |
20810066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 41529233 - 41529008
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41529233 |
tattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattttggataagctgcttgcaatttcgggactaatgccaaggtgagttcctt |
41529134 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
||| |||||||||||||||||| || |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| |||| | ||||||| |
|
|
| T |
41529133 |
tagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgca |
41529034 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
|||||||||| ||| |||||||||| |
|
|
| T |
41529033 |
agcatgactactatgtcatatgaatg |
41529008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37368340 - 37368563
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaattttgggactaatgccaaggtgagttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
37368340 |
tattttggaaaatggattatggagttttgga-ctagcaaaagctgcaaattttggataagctgcttgcaatttcgggactaattccaaggtgagttcctt |
37368438 |
T |
|
| Q |
101 |
tagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattacttgccgattgtgca |
200 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||||| ||||||||| |||||| ||| |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
37368439 |
tagctttgaacccacctttggagatcgattatgattatgctagattattaagataacatgaataattagacca-ttttatgattacttgccttttgtgca |
37368537 |
T |
|
| Q |
201 |
agcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
| | || || | |||||||||||||| |
|
|
| T |
37368538 |
aacgtgtctgttatgccatatgaatg |
37368563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 14530141 - 14530280
Alignment:
| Q |
87 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| | |
|
|
| T |
14530141 |
aaggtgagttcctttagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
14530240 |
T |
|
| Q |
187 |
ttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
14530241 |
ttgtcttttgtgcaagcatgactactatgccatatgaatg |
14530280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28035261 - 28035190
Alignment:
| Q |
1 |
tattttggaaaatggattatggagttttggagctagcaaaagcttcaaattgtggataagttgcttgcaatt |
72 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| || |||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
28035261 |
tattttcgaaaagtgattacggagttttgtagaaagcagaagctgcaaattgtggataagctgcttgcaatt |
28035190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 26259 - 26398
Alignment:
| Q |
87 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattgagataatatggataattagaccatttttatgattac |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| | |
|
|
| T |
26259 |
aaggtgagttcctttagcttagaacccgcctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
26358 |
T |
|
| Q |
187 |
ttgccgattgtgcaagcatgactatcatgccatatgaatg |
226 |
Q |
| |
|
||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
26359 |
ttgtcttttgtgcaagcatgactactatgccatatgaatg |
26398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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