View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11606_high_9 (Length: 238)
Name: NF11606_high_9
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11606_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3300364 - 3300135
Alignment:
| Q |
1 |
aaatcaaaaccactcaccttttattacccctcacgctcaaatctcatctaactaatnnnnnnncaa-------ccaatgacatactcaaaacaaaacacc |
93 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||| |
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| T |
3300364 |
aaatcaaaaccactcaccttttattactcctcacactcaaatctcatttaactaataaaaaaaaaaaaaaaaaccaatgacatactcaaaacaaaacacc |
3300265 |
T |
|
| Q |
94 |
caaaactacctcgttataccacgatgttgtgtcttcctattatggatagtgtttctagcattgtgtataacggcgttgtttttcctatggccattaaacc |
193 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300264 |
caaaattaccttgttataccacgatgttgtgtcttcctattatggatagtggttctagcattgtgtataacggcgttgtttttcctatggccattaaacc |
3300165 |
T |
|
| Q |
194 |
cagaaattgaaatggaaagtttaatagtaa |
223 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
3300164 |
cagaaattgaaatggaaagtttaatagtaa |
3300135 |
T |
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