View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11606_low_1 (Length: 721)
Name: NF11606_low_1
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11606_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 601; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 19 - 705
Target Start/End: Original strand, 31188469 - 31189155
Alignment:
| Q |
19 |
cagagaccaacatcacccacactaaagttccacacccacctacccacaagaaaaaacctccctacatcaatcaaagttgccaacgcagcaagaagaaacc |
118 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31188469 |
cagagactaacatcacccacactaaagttccacatccacctacccacaagaaaaaacctccctacatcgatcaaagttgccaacgcagcaagaagaaacc |
31188568 |
T |
|
| Q |
119 |
atcataaaccatcctatctaaaaacaaattcatagcaaaagatactaggaacacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacag |
218 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31188569 |
atcataaaccatc-tatctaaaatcaaattcatagcaaaagatactaggaacacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacag |
31188667 |
T |
|
| Q |
219 |
aaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagtagacaagttaaaatattagatcacctnnnnn |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188668 |
aaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagtagacaagttaaaatattagatcacctaaaaa |
31188767 |
T |
|
| Q |
319 |
nnnn-ttcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacacatattaaggatatgacttaatcacggcttac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
31188768 |
aaaaattcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacacatattaaggatatgacttaatcacgacttac |
31188867 |
T |
|
| Q |
418 |
tagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaaggatttaagatgataaca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31188868 |
tagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaatgatttaagatgataaca |
31188967 |
T |
|
| Q |
518 |
ttatgaattgttaatgactttgcataagtataaaaactattcgagacatacacttgaacctaattgcttcacaagatgattaaaagggtggagagtgtct |
617 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
31188968 |
ttatgaattgttcatgactttgcataagtataaaaactattcgagacatacacttgaacctaatttcttcacaagatgattaaaagggtggagagtgtct |
31189067 |
T |
|
| Q |
618 |
tcatttgaagaggttaccaactctgattaaaagatatataacaattatacttaccctcaaatattaagacttagaagactctgatatt |
705 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31189068 |
tcatttgaagaggttatcaactttgattaaaagatatataacaattatacttaccctcaaatattaagacttaaaagactctgatatt |
31189155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 189 - 705
Target Start/End: Original strand, 31200445 - 31200962
Alignment:
| Q |
189 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31200445 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
31200544 |
T |
|
| Q |
289 |
gacaagttaaaatattagatcacctnnnnnnnnn-ttcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
387 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31200545 |
gacaagttaaaatattagatcacctaaaaaaaaaattcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
31200644 |
T |
|
| Q |
388 |
tattaaggatatgacttaatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaa |
487 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31200645 |
tattaaggatatgacttaatcacgacttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaa |
31200744 |
T |
|
| Q |
488 |
ccaacttctaaaggatttaagatgataacattatgaattgttaatgactttgcataagtataaaaactattcgagacatacacttgaacctaattgcttc |
587 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31200745 |
ccaacttctaaatgatttaagatgataacattatgaattgttcatgactttgcataagtataaaaactattcgagacatacacttgaacctaattgcttc |
31200844 |
T |
|
| Q |
588 |
acaagatgattaaaagggtggagagtgtcttcatttgaagaggttaccaactctgattaaaagatatataacaattatacttaccctcaaatattaagac |
687 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31200845 |
acaaaatgattaaaagggtggagagtgtcttcatttgaagaggttaccaactctgattaaaagatatataacaattatacttaccctcaaatattaagac |
31200944 |
T |
|
| Q |
688 |
ttagaagactctgatatt |
705 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
31200945 |
ttaaaagactctgatatt |
31200962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 31200309 - 31200450
Alignment:
| Q |
19 |
cagagaccaacatcacccacactaaagttccacacccacctacccacaagaaaaaacctccctacatcaatcaaagttgccaacgcagcaagaagaaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200309 |
cagagaccaacatcacccacactaaagttccacatccacctacccacaagaaaaaacctccctacatcaatcaaagttgccaacgcagcaagaagaaacc |
31200408 |
T |
|
| Q |
119 |
atcataaaccatcctatctaaaaacaaattcatagcaaaaga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31200409 |
atcataaaccatcctatctaaaaacaaattcatagcaaaaga |
31200450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 567 - 675
Target Start/End: Original strand, 31144935 - 31145043
Alignment:
| Q |
567 |
acacttgaacctaattgcttcacaagatgattaaaagggtggagagtgtcttcatttgaagaggttaccaactctgattaaaagatatataacaattata |
666 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||| | |||||| |||||| |||||||||||||||| |
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|
| T |
31144935 |
acacttaaacccaatagcttcacaagatgattaaaagggtggagattgttatcatttgaagtggttatccactctgtttaaaatatatataacaattata |
31145034 |
T |
|
| Q |
667 |
cttaccctc |
675 |
Q |
| |
|
||||||||| |
|
|
| T |
31145035 |
cttaccctc |
31145043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 31170908 - 31170982
Alignment:
| Q |
405 |
aatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcata |
479 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31170908 |
aatcacggctttctagtgacttccacataaaataaaaacattttctagtatagcttgttctccatttgtagcata |
31170982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 521
Target Start/End: Original strand, 31144770 - 31144869
Alignment:
| Q |
422 |
tacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaaggat-ttaagatgataacatta |
520 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| | ||||||||| |||||||||| |||||||| |||||||||||| | | ||||||||||||||| |
|
|
| T |
31144770 |
tacttccaaataagataaaaatattttctagtataacatgttctcca-ttgtagcatatgcagcaacaaacttctaaaggttataaagatgataacatta |
31144868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 526
Target Start/End: Complemental strand, 31225277 - 31225168
Alignment:
| Q |
415 |
tactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaaggatttaagatgata |
514 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| |||||||||||||| | |||||||||| || |||| ||||||| |||||||| || |||| || |
|
|
| T |
31225277 |
tactagttgcttccacataagataaact--ttttgtagtatagcttgtttttcatttgtagcttatgcagtcgccaacttataaaggatatatgatgtta |
31225180 |
T |
|
| Q |
515 |
acattatgaatt |
526 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
31225179 |
aaattataaatt |
31225168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 633
Target Start/End: Original strand, 31171328 - 31171394
Alignment:
| Q |
567 |
acacttgaacctaattgcttcacaagatgattaaaagggtggagagtgtcttcatttgaagaggtta |
633 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||| || |||||| |||||||||||||| |||||| |
|
|
| T |
31171328 |
acacttgaactcaattgcttaacaagaagattaaagggatggagattgtcttcatttgaaaaggtta |
31171394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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