View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11606_low_10 (Length: 231)
Name: NF11606_low_10
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11606_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37831651 - 37831877
Alignment:
| Q |
1 |
ttgtccacaactttggttactaccacactgaaaacaacagttacatccatatcatttaaatggattttgttcttggctgtttcnnnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
37831651 |
ttgtccacaactttggttactaacacactgaaaacaacagttacatccatatcatttcaatggtttttgttcttggctgtttcaaaaaaaaaaa------ |
37831744 |
T |
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| Q |
101 |
nnggtttttgttcttggtannnnnnncagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttg----ttcgtgaaggacctcc |
196 |
Q |
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| T |
37831745 |
--ggtttttgttcttggtatttttttcggttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgtttgttcgtgaaggacctcc |
37831842 |
T |
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| Q |
197 |
tttaacatctgtgttggttaagaagcttcagttct |
231 |
Q |
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| T |
37831843 |
tttaacatctgtgttggttaagaagcttcagttct |
37831877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 37839910 - 37840014
Alignment:
| Q |
127 |
cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaacatctgtgttggttaagaagcttca |
226 |
Q |
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| T |
37839910 |
cagttaagattaatcaagaatttgtcttaggagccttcattttgggactgtctgttcctgaaggagctcctttaggatctacattggttaagaagcttca |
37840009 |
T |
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| Q |
227 |
gttct |
231 |
Q |
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||||| |
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| T |
37840010 |
gttct |
37840014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 38391582 - 38391480
Alignment:
| Q |
127 |
cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaacatctgtgttggttaagaagcttca |
226 |
Q |
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| T |
38391582 |
cagttaagattaatcaagaatttgtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttca |
38391483 |
T |
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| Q |
227 |
gtt |
229 |
Q |
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||| |
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| T |
38391482 |
gtt |
38391480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 38382724 - 38382622
Alignment:
| Q |
127 |
cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaacatctgtgttggttaagaagcttca |
226 |
Q |
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| T |
38382724 |
cagttaagattaatcaagaatttgccataggagctttcattttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttca |
38382625 |
T |
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| Q |
227 |
gtt |
229 |
Q |
| |
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||| |
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| T |
38382624 |
gtt |
38382622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 38400171 - 38400067
Alignment:
| Q |
127 |
cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaacatctgtgttggttaagaagcttca |
226 |
Q |
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|||||||||| ||||| |||| ||||||||||||| |||||||||| | ||||| ||||||||||||| || ||||| ||||||||||||||||| |
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| T |
38400171 |
cagttaagattaatcaattatttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctctaggatctgcattggttaagaagcttca |
38400072 |
T |
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| Q |
227 |
gttct |
231 |
Q |
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||||| |
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| T |
38400071 |
gttct |
38400067 |
T |
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