View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11606_low_2 (Length: 543)

Name: NF11606_low_2
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11606_low_2
NF11606_low_2
[»] chr8 (13 HSPs)
chr8 (224-468)||(22201459-22201704)
chr8 (27-164)||(22202467-22202604)
chr8 (459-536)||(22200717-22200794)
chr8 (495-543)||(27746485-27746534)
chr8 (495-543)||(2618188-2618237)
chr8 (495-543)||(3734773-3734822)
chr8 (495-543)||(18532109-18532158)
chr8 (495-543)||(19471611-19471660)
chr8 (495-543)||(19542535-19542584)
chr8 (495-543)||(19590112-19590161)
chr8 (495-543)||(34237805-34237854)
chr8 (495-542)||(4718647-4718695)
chr8 (496-543)||(28193477-28193525)
[»] chr7 (14 HSPs)
chr7 (495-543)||(31713045-31713094)
chr7 (495-543)||(2103057-2103106)
chr7 (495-543)||(2344301-2344350)
chr7 (495-543)||(2751273-2751322)
chr7 (495-543)||(7176012-7176061)
chr7 (495-543)||(7275279-7275328)
chr7 (495-543)||(13332573-13332622)
chr7 (495-543)||(18044109-18044158)
chr7 (495-543)||(21217983-21218032)
chr7 (495-543)||(22119890-22119939)
chr7 (495-543)||(23854398-23854447)
chr7 (495-543)||(40543060-40543109)
chr7 (495-542)||(21370599-21370647)
chr7 (496-543)||(27312155-27312203)
[»] chr5 (14 HSPs)
chr5 (495-543)||(11926652-11926701)
chr5 (495-543)||(13038604-13038653)
chr5 (496-543)||(3715059-3715107)
chr5 (511-542)||(21042676-21042707)
chr5 (456-498)||(11983247-11983289)
chr5 (495-543)||(4603775-4603824)
chr5 (495-543)||(8484811-8484860)
chr5 (495-543)||(13108599-13108648)
chr5 (495-543)||(22392699-22392748)
chr5 (495-543)||(25586930-25586979)
chr5 (495-543)||(32059590-32059639)
chr5 (495-543)||(38631111-38631160)
chr5 (455-495)||(14167143-14167183)
chr5 (515-543)||(18207226-18207254)
[»] chr3 (10 HSPs)
chr3 (495-543)||(50582990-50583039)
chr3 (495-543)||(16140295-16140344)
chr3 (495-543)||(30257622-30257671)
chr3 (495-543)||(30807303-30807352)
chr3 (495-543)||(34492725-34492774)
chr3 (495-543)||(35492909-35492958)
chr3 (495-543)||(45529904-45529953)
chr3 (495-543)||(46576346-46576395)
chr3 (495-543)||(53424326-53424375)
chr3 (496-543)||(25379760-25379808)
[»] chr1 (8 HSPs)
chr1 (496-543)||(46113552-46113600)
chr1 (495-543)||(4621387-4621436)
chr1 (502-542)||(6776149-6776190)
chr1 (495-543)||(7197396-7197445)
chr1 (495-543)||(8077645-8077694)
chr1 (495-543)||(24674391-24674440)
chr1 (495-539)||(29057491-29057536)
chr1 (495-543)||(34778340-34778389)
[»] scaffold0623 (1 HSPs)
scaffold0623 (495-543)||(1206-1255)
[»] scaffold0576 (1 HSPs)
scaffold0576 (495-543)||(5232-5281)
[»] scaffold0459 (1 HSPs)
scaffold0459 (495-543)||(10843-10892)
[»] scaffold0366 (2 HSPs)
scaffold0366 (495-543)||(9449-9498)
scaffold0366 (495-543)||(12150-12199)
[»] scaffold0199 (1 HSPs)
scaffold0199 (495-543)||(8557-8606)
[»] chr6 (5 HSPs)
chr6 (495-543)||(9238973-9239022)
chr6 (495-543)||(12591635-12591684)
chr6 (495-543)||(15360248-15360297)
chr6 (495-543)||(22576065-22576114)
chr6 (495-543)||(33499472-33499521)
[»] chr4 (10 HSPs)
chr4 (495-543)||(20566347-20566396)
chr4 (495-543)||(22625220-22625269)
chr4 (495-543)||(25852212-25852261)
chr4 (495-543)||(32986195-32986244)
chr4 (495-543)||(40059002-40059051)
chr4 (495-543)||(46714390-46714439)
chr4 (495-543)||(54127492-54127541)
chr4 (515-543)||(33992645-33992673)
chr4 (515-543)||(39288885-39288913)
chr4 (515-543)||(49287877-49287905)
[»] chr2 (3 HSPs)
chr2 (495-543)||(17324764-17324813)
chr2 (495-543)||(18976575-18976624)
chr2 (515-543)||(41314011-41314039)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 224 - 468
Target Start/End: Complemental strand, 22201704 - 22201459
Alignment:
Q  224 caagggaacagttagctactatacatttatgttaaagtggtgagctttcttcctgctgttccctagttatgtaggcttcaatatgaaaaatatgatgtgt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22201704 caagggaacagttagctactatacatttatgttaaagtggtgagctttcttcctgctgttccctagttatgtaggcttcaatatgaaaaatatgatatgt 22201605  T
Q  324 ctctctcaactcaaccatctagaatctagctttgtccagtgctatgagtactttgctggattgagattt-aaatgtagtggaccattagtttaattcttc 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  22201604 ctctctcaactcaaccatctagaatctagctttgtccagtgctataagtactttgctggattgagatttaaaatgtagtggaccattagtttaattctcc 22201505  T
Q  423 ccctatgtctaactccaagcttattcatatacgggtagcattttgg 468  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  22201504 ccctatgtctaactccaagcttattcatatacgggtggcattttgg 22201459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 22202604 - 22202467
Alignment:
Q  27 gtgtggcatattaatttagtgaccatgttttctgtctctaaaaaatatttcttctttcactaatctcctacagtgaggtaaatataatttcctcttggac 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  22202604 gtgtggcatattaatttagtgaccatgttttctgtctctaaaaaatagttcttctttcactaatctcctagagtgtggtaaatataatttcctcttggac 22202505  T
Q  127 caagcataatccccttatgttaaattttttcttataac 164  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22202504 caagcataatccccttatcttaaattttttcttataac 22202467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 459 - 536
Target Start/End: Complemental strand, 22200794 - 22200717
Alignment:
Q  459 agcattttggtgatatagaattggtgatattggtgacatttgaggttggcctgtgattggtttgggatcttggagttt 536  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22200794 agcattttggtgatgtagaattggtgatattggtgacatttgaggttggcctgtggttggtttgggatcttggagttt 22200717  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 27746534 - 27746485
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  27746534 catttggggttggcctagtggttggtttgggatcttggagtttgctcctc 27746485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 2618188 - 2618237
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  2618188 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 2618237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 3734822 - 3734773
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  3734822 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 3734773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 18532109 - 18532158
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  18532109 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 18532158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 19471611 - 19471660
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  19471611 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 19471660  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 19542535 - 19542584
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  19542535 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 19542584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 19590161 - 19590112
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  19590161 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 19590112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 34237854 - 34237805
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  34237854 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 34237805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 542
Target Start/End: Original strand, 4718647 - 4718695
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcct 542  Q
    |||||| ||||||||| ||| |||| |||||||||||||||||||||||    
T  4718647 catttggggttggcctagtggttggcttgggatcttggagtttgctcct 4718695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 28193477 - 28193525
Alignment:
Q  496 atttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    ||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  28193477 atttggggttggcctagtggttggcttgggatcttggagtttgctcctc 28193525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 31713094 - 31713045
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  31713094 catttggggttggcctagtggttggtttgggatcttggagtttgctcctc 31713045  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 2103057 - 2103106
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  2103057 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 2103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 2344301 - 2344350
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  2344301 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 2344350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 2751273 - 2751322
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  2751273 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 2751322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 7176061 - 7176012
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  7176061 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 7176012  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 7275279 - 7275328
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  7275279 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 7275328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 13332622 - 13332573
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  13332622 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 13332573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 18044109 - 18044158
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  18044109 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 18044158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 21218032 - 21217983
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  21218032 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 21217983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 22119890 - 22119939
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  22119890 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 22119939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 23854398 - 23854447
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  23854398 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 23854447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 40543109 - 40543060
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  40543109 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 40543060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 542
Target Start/End: Original strand, 21370599 - 21370647
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcct 542  Q
    |||||| ||||||||| ||| |||||||||||||||||||||| |||||    
T  21370599 catttggggttggcctagtggttggtttgggatcttggagtttactcct 21370647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 27312155 - 27312203
Alignment:
Q  496 atttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    ||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  27312155 atttggggttggcctagtggttggcttgggatcttggagtttgctcctc 27312203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 11926701 - 11926652
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  11926701 catttggggttggcctagtggttggtttgggatcttggagtttgctcctc 11926652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 13038653 - 13038604
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  13038653 catttggggttggcctagtggttggtttgggatcttggagtttgctcctc 13038604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 543
Target Start/End: Complemental strand, 3715107 - 3715059
Alignment:
Q  496 atttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  3715107 atttggggttggcctagtggttggtttgggatcttggagtttgctcctc 3715059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 542
Target Start/End: Complemental strand, 21042707 - 21042676
Alignment:
Q  511 gtgattggtttgggatcttggagtttgctcct 542  Q
    ||||||||||||||||||||||||||||||||    
T  21042707 gtgattggtttgggatcttggagtttgctcct 21042676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 498
Target Start/End: Original strand, 11983247 - 11983289
Alignment:
Q  456 ggtagcattttggtgatatagaattggtgatattggtgacatt 498  Q
    ||||||| || ||||| ||||||||||||||||||||||||||    
T  11983247 ggtagcacttgggtgacatagaattggtgatattggtgacatt 11983289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 4603775 - 4603824
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  4603775 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 4603824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 8484860 - 8484811
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  8484860 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 8484811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 13108648 - 13108599
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  13108648 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 13108599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 22392699 - 22392748
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  22392699 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 22392748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 25586930 - 25586979
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  25586930 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 25586979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 32059639 - 32059590
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  32059639 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 32059590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 38631160 - 38631111
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  38631160 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 38631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 495
Target Start/End: Original strand, 14167143 - 14167183
Alignment:
Q  455 gggtagcattttggtgatatagaattggtgatattggtgac 495  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  14167143 gggtagcacttgggtgatatagaattgatgatattggtgac 14167183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 18207226 - 18207254
Alignment:
Q  515 ttggtttgggatcttggagtttgctcctc 543  Q
    |||||||||||||||||||||||||||||    
T  18207226 ttggtttgggatcttggagtttgctcctc 18207254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 50582990 - 50583039
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  50582990 catttggggttggcctagtggttggtttgggatcttggagtttgctcctc 50583039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 16140295 - 16140344
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||||||||    
T  16140295 catttggggttggcctagtgattagtttgggatcttggagcttgctcctc 16140344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 30257622 - 30257671
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  30257622 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 30257671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 30807352 - 30807303
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  30807352 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 30807303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 34492774 - 34492725
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  34492774 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 34492725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 35492909 - 35492958
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  35492909 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 35492958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 45529953 - 45529904
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  45529953 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 45529904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 46576346 - 46576395
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  46576346 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 46576395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 53424375 - 53424326
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  53424375 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 53424326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 25379760 - 25379808
Alignment:
Q  496 atttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    ||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  25379760 atttggggttggcctagtggttggcttgggatcttggagtttgctcctc 25379808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 543
Target Start/End: Complemental strand, 46113600 - 46113552
Alignment:
Q  496 atttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  46113600 atttggggttggcctagtggttggtttgggatcttggagtttgctcctc 46113552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 4621436 - 4621387
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  4621436 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 4621387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 542
Target Start/End: Original strand, 6776149 - 6776190
Alignment:
Q  502 ggttggcct-gtgattggtttgggatcttggagtttgctcct 542  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  6776149 ggttggcctagtggttggtttgggatcttggagtttgctcct 6776190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 7197445 - 7197396
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  7197445 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 7197396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 8077645 - 8077694
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  8077645 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 8077694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 24674391 - 24674440
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  24674391 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 24674440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 539
Target Start/End: Complemental strand, 29057536 - 29057491
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgct 539  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||    
T  29057536 catttggggttggcctagtggttggtttgggatcttggagtttgct 29057491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 34778340 - 34778389
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  34778340 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 34778389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 1255 - 1206
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  1255 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 1206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 5281 - 5232
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  5281 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 5232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 10892 - 10843
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  10892 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 10843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 9498 - 9449
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  9498 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 9449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 12199 - 12150
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  12199 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 12150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 8606 - 8557
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  8606 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 8557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 9238973 - 9239022
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  9238973 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 9239022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 12591635 - 12591684
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  12591635 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 12591684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 15360297 - 15360248
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  15360297 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 15360248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 22576065 - 22576114
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  22576065 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 22576114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 33499472 - 33499521
Alignment:
Q  495 catttgaggttggcctg-tgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  33499472 catttggggttggcctggtggttggcttgggatcttggagtttgctcctc 33499521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 20566347 - 20566396
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  20566347 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 20566396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 22625269 - 22625220
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||||||||||||| ||| |||| ||||||||||||||||| ||||||    
T  22625269 catttgaggttggcctagtggttggcttgggatcttggagtttactcctc 22625220  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 25852212 - 25852261
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  25852212 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 25852261  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 32986195 - 32986244
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  32986195 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 32986244  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 40059051 - 40059002
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  40059051 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 40059002  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 46714390 - 46714439
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  46714390 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 46714439  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 54127541 - 54127492
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  54127541 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 54127492  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 33992645 - 33992673
Alignment:
Q  515 ttggtttgggatcttggagtttgctcctc 543  Q
    |||||||||||||||||||||||||||||    
T  33992645 ttggtttgggatcttggagtttgctcctc 33992673  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 39288885 - 39288913
Alignment:
Q  515 ttggtttgggatcttggagtttgctcctc 543  Q
    |||||||||||||||||||||||||||||    
T  39288885 ttggtttgggatcttggagtttgctcctc 39288913  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 49287877 - 49287905
Alignment:
Q  515 ttggtttgggatcttggagtttgctcctc 543  Q
    |||||||||||||||||||||||||||||    
T  49287877 ttggtttgggatcttggagtttgctcctc 49287905  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 17324764 - 17324813
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| ||||||||| |||||||||||||||||||    
T  17324764 catttggggttggcctagtggttggtttggtatcttggagtttgctcctc 17324813  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 18976624 - 18976575
Alignment:
Q  495 catttgaggttggcct-gtgattggtttgggatcttggagtttgctcctc 543  Q
    |||||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  18976624 catttggggttggcctagtggttggcttgggatcttggagtttgctcctc 18976575  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 41314011 - 41314039
Alignment:
Q  515 ttggtttgggatcttggagtttgctcctc 543  Q
    |||||||||||||||||||||||||||||    
T  41314011 ttggtttgggatcttggagtttgctcctc 41314039  T

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