View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11606_low_4 (Length: 347)
Name: NF11606_low_4
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11606_low_4 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4341941 - 4342265
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttcattcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4341941 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttcattcc |
4342040 |
T |
|
| Q |
101 |
agtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4342041 |
agtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattct |
4342140 |
T |
|
| Q |
201 |
ttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatcca |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4342141 |
ttctccattgctcatataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatcca |
4342240 |
T |
|
| Q |
301 |
aagggtttaactagcaacttatgac |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4342241 |
aagggtttaactagcaacttatgac |
4342265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 42785363 - 42785040
Alignment:
| Q |
3 |
tatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaat--ttcattcc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
42785363 |
tatgtcttggcttataggtcttgctctttccgaaacaactcaactcatttgtgacatactcttacttcatcaaccagcatatacaaaaaaaattcattcc |
42785264 |
T |
|
| Q |
101 |
agtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattct |
200 |
Q |
| |
|
||||||||||||||||| | | | ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
42785263 |
agtccctgcacccgaagtttgtcgtttggctatttaagcacctccaaaacagcttaattaccatttaagctcttttaccatgattagaacagcttattct |
42785164 |
T |
|
| Q |
201 |
ttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatcca |
300 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
42785163 |
ttttccattgctcatataccaattcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccgacttaagctattataca |
42785064 |
T |
|
| Q |
301 |
aagggtttaactagcaacttatga |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42785063 |
aagggtttaactagcaacttatga |
42785040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 94 - 324
Target Start/End: Original strand, 48478664 - 48478894
Alignment:
| Q |
94 |
tcattccagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagc |
193 |
Q |
| |
|
||||||||||||||||| |||||| | | | ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
48478664 |
tcattccagtccctgcatccgaagtttgtcgtttggctatttaagcacctccaaaacagcttaattaccatttaagctcttttaccatgattagaacagc |
48478763 |
T |
|
| Q |
194 |
ttattctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagcta |
293 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48478764 |
ttattctttttccattgctcatataccaattcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccgacttaagcta |
48478863 |
T |
|
| Q |
294 |
ttatccaaagggtttaactagcaacttatga |
324 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
48478864 |
ttatacaaagggtttaactagcaacttatga |
48478894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 125 - 295
Target Start/End: Complemental strand, 3078098 - 3077928
Alignment:
| Q |
125 |
tttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattctttctccattgctcacataccaatt |
224 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| |||||||||| | | ||| | || |||||||||| ||| |||||| |||| ||||||||| |
|
|
| T |
3078098 |
tttggccatttaagcacttctaaaacagcttaattacaatttaagcacttctgtcattactagaacagcttatcatttttccattactcatataccaatt |
3077999 |
T |
|
| Q |
225 |
caacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctatt |
295 |
Q |
| |
|
||||||||| ||||| | ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
3077998 |
caacatatctctcctaagctggtcatcacaagataatacatgaaacaacttaaattccaacttaagctatt |
3077928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 21957905 - 21957716
Alignment:
| Q |
51 |
ttgtgacatactctaacttcatcaaacagcatatacaaaaatt-tcattccagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaa |
149 |
Q |
| |
|
||||||||||||| |||||||||| || ||||| | |||||| ||||| ||||| ||||| | |||| || | ||||||||||||||||| ||||||| |
|
|
| T |
21957905 |
ttgtgacatactcctacttcatcaaccaacatatgcgaaaattctcatttcagtcactgcaacagaagttcaccgtttggctatttaagcacctccaaaa |
21957806 |
T |
|
| Q |
150 |
cagcttaattaccatttaagcacctttaccatgattataacagcttattctttctccattgctcacataccaattcaacatatccctcct |
239 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| | || |||||||||| ||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
21957805 |
cagcttaattatcatttaagcacttttaccattactaaaacagcttatcatttctccataactcatataccaattcaacatatctctcct |
21957716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 263
Target Start/End: Original strand, 3081755 - 3081975
Alignment:
| Q |
35 |
aaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttca-ttccagtccctgcacccgaagctcgacatttggctat |
133 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||| || || ||||||||| |||||| | || ||||||||| ||| ||| || |||||| || |
|
|
| T |
3081755 |
aaacaactcaacccacttgtgacatactcttacttaatgaaccagcatatatgaaaattcaaatttcagtccctgtaccaaaagttcattgtttggccat |
3081854 |
T |
|
| Q |
134 |
ttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattctttctccattgctcacataccaattcaacatatc |
233 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| || |||| || |||| ||||| ||| |||||| |||| |||||||||||||||||| |
|
|
| T |
3081855 |
ttaagcacttctaaaacagcttaattacaatttagtca---ttac------tagaacaacttatcatttttccattactcatataccaattcaacatatc |
3081945 |
T |
|
| Q |
234 |
cctcctgaactgttcatcacaagataatac |
263 |
Q |
| |
|
|| || | ||| ||||||||||||||||| |
|
|
| T |
3081946 |
tctactaagctggtcatcacaagataatac |
3081975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 5249427 - 5249102
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttc-attc |
99 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |||| |
|
|
| T |
5249427 |
cttatgtcttggcttataggtctttctctttccaaaacaactcaactcatttgtgacatactcttacttcatcaaccagcatatacaaaaatttccattc |
5249328 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattc |
199 |
Q |
| |
|
|||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||| |
|
|
| T |
5249327 |
cagtccctgcacccgaagtttgccgtttggctatttaagcacttccaaaacagcttaattaccatttaagcacatttaccatgattagaactgctcattc |
5249228 |
T |
|
| Q |
200 |
tttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatcc |
299 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5249227 |
tttttccattgctcatataccaattcaacatatctctcctaaactgttcatcacaagataatacctgacacaacttaaattccatcttaagctattatcc |
5249128 |
T |
|
| Q |
300 |
aaagggtttaactagcaacttatgac |
325 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5249127 |
aaagggtttaactagcaacttatgac |
5249102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 28223306 - 28223631
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaat-ttcattc |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||||| ||| |||||| ||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
28223306 |
cttatgtcttggcttataggtcttgctctttccgaaacaactcaactcatttgcgacatagtcttacttcatcaaccagcatatacaaaaaaattcattc |
28223405 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattc |
199 |
Q |
| |
|
||||||||| |||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| | |||||||||| |
|
|
| T |
28223406 |
cagtccctgaacccgaagttcgtcgtttggctatttaagcacttacaaaacagcttaattaccatttaatcccctttaccatgattagaccagcttattc |
28223505 |
T |
|
| Q |
200 |
tttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatcc |
299 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28223506 |
tttttccattgctcatataccaattcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccaatttaagctattatcc |
28223605 |
T |
|
| Q |
300 |
aaagggtttaactagcaacttatgac |
325 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
28223606 |
aaagggtttaactaggaacttatgac |
28223631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 33295596 - 33295437
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttc-attc |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||| ||||||| || |||||||| ||| |
|
|
| T |
33295596 |
cttatgtcttggcttataggtcttgctctttccaaaacaactcaactcatttgtgacgtactcttacttcatcaaccagcatacacgaaaatttcaattt |
33295497 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaatta |
160 |
Q |
| |
|
|||||| |||||| |||| || | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33295496 |
cagtccttgcaccagaagtacgtcgtttggctatttaagcacttcc-aaacagcttaatta |
33295437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29934012 - 29933856
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttc-attc |
99 |
Q |
| |
|
|||||||||||| ||||| |||||||||| || |||||| |||||| |||| || |||||| |||||||||| ||||||| | |||||||| ||| |
|
|
| T |
29934012 |
cttatgtcttggcttatagatcttgctcttcccgaaacaa---aactcatttgtaacgtactcttacttcatcaaccagcatacatgaaaatttccattt |
29933916 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaatta |
160 |
Q |
| |
|
|||||| |||||| |||| || | |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
29933915 |
cagtccttgcaccagaagtacgccgtttgactatttaagcacttccaaaa-agcttaatta |
29933856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 8520355 - 8520459
Alignment:
| Q |
57 |
catactctaacttcatcaaacagcatatacaaaaatttc-attccagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagctt |
155 |
Q |
| |
|
|||||||| |||||||||| ||||||| || ||||||| ||| |||||| |||||| |||| || | ||||||||||||||||||| | ||||||||| |
|
|
| T |
8520355 |
catactcttacttcatcaaccagcatacacggaaatttccatttcagtccttgcaccagaagtacgccgtttggctatttaagcactt-cgaaacagctt |
8520453 |
T |
|
| Q |
156 |
aattac |
161 |
Q |
| |
|
|||||| |
|
|
| T |
8520454 |
aattac |
8520459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 23804 - 24129
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaat-ttcattc |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||||| ||| |||||| ||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
23804 |
cttatgtcttggcttataggtcttgctctttccgaaacaactcaactcatttgcgacatagtcttacttcatcaaccagcatatacaaaaaaattcattc |
23903 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattc |
199 |
Q |
| |
|
||||||||| |||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| | |||||||||| |
|
|
| T |
23904 |
cagtccctgaacccgaagttcgtcgtttggctatttaagcacttacaaaacagcttaattaccatttaatcccctttaccatgattagaccagcttattc |
24003 |
T |
|
| Q |
200 |
tttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatcc |
299 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24004 |
tttttccattgctcatataccaattcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccaatttaagctattatcc |
24103 |
T |
|
| Q |
300 |
aaagggtttaactagcaacttatgac |
325 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
24104 |
aaagggtttaactaggaacttatgac |
24129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 14114212 - 14113887
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaa--tttcatt |
98 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |||||| ||| |||| |||||||||||||| |||||||||| ||||||||| ||||| || |||| |
|
|
| T |
14114212 |
cttatgtcttggcttataggtctttctctttccgaaacaactcagctcatttgtgacatactcttacttcatcaaccagcatataaaaaaaaattccatt |
14114113 |
T |
|
| Q |
99 |
ccagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttatt |
198 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
14114112 |
ccagtccctgcacccgaagttac-cgtttggctatttaagcacgtccaaaacagcttaattaccatttaagcacctttaccatgattagaacaccttatt |
14114014 |
T |
|
| Q |
199 |
ctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatc |
298 |
Q |
| |
|
|||| ||||||||||| ||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14114013 |
ctttttccattgctcatataacaattcaaaatatctctcctaaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatc |
14113914 |
T |
|
| Q |
299 |
caaagggtttaactagcaacttatgac |
325 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
14113913 |
taaagggtttaactcgcaacttatgac |
14113887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 325
Target Start/End: Complemental strand, 44193450 - 44193166
Alignment:
| Q |
42 |
tcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaa-tttcattccagtccctgcacccgaagctcgacatttggctatttaagca |
140 |
Q |
| |
|
||||| || |||||| ||||||| |||| || || ||||||||||||||| ||||||| |||||||||| || |||| || |||||| ||||||||| |
|
|
| T |
44193450 |
tcaacccatttgtgatatactcttacttaatgaaccagcatatacaaaaaatttcatttcagtccctgccccagaagttcattgtttggccatttaagca |
44193351 |
T |
|
| Q |
141 |
cttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattctttctccattgctcacataccaattcaacatatccctcctg |
240 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| ||| | || |||||||||| ||| |||| |||| |||||| | | ||||| ||||| |
|
|
| T |
44193350 |
cttccaaaacagcttaattacaatttaagcacttttgtcattactagaacagcttataattttatcattactcatataccagcttaccatatttctccta |
44193251 |
T |
|
| Q |
241 |
aactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatccaaagggtttaactagcaacttatgac |
325 |
Q |
| |
|
| ||||||||||||| |||||| |||| ||| | |||||| |||||||||| ||||||||| | |||||||| |||||||||| |
|
|
| T |
44193250 |
agctgttcatcacaaaataatatctgaaacagttcaaattcaaacttaagctcttatccaaacagcttaactagtaacttatgac |
44193166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 94 - 324
Target Start/End: Original strand, 5600305 - 5600535
Alignment:
| Q |
94 |
tcattccagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagc |
193 |
Q |
| |
|
||||||||||||||||| |||||| | | | ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
5600305 |
tcattccagtccctgcatccgaagtttgtcgtttggctatttaagcacctccaaaacagcttaattaccatttaagctcttttaccatgattagaacagc |
5600404 |
T |
|
| Q |
194 |
ttattctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagcta |
293 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5600405 |
ttattctttttccattgctcatataccaattcaacatatccctcctaaactgttcatcacaagataatacctgacacaacttaaattccgacttaagcta |
5600504 |
T |
|
| Q |
294 |
ttatccaaagggtttaactagcaacttatga |
324 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
5600505 |
ttatacaaagggtttaactagcaacttatga |
5600535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 4853235 - 4853547
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaa--tttcatt |
98 |
Q |
| |
|
|||||||||||| ||||||| || |||||||| |||||| ||| |||| |||||||||||||| |||||||||| ||||||||||||||| || |||| |
|
|
| T |
4853235 |
cttatgtcttggcttataggtttttctctttccgaaacaactcagctcatttgtgacatactcttacttcatcaaccagcatatacaaaaaaattccatt |
4853334 |
T |
|
| Q |
99 |
ccagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttatt |
198 |
Q |
| |
|
|||||||||||||| |||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
4853335 |
ccagtccctgcaccggaagttcgccgtttggctatttaagcacgtccaaaacagcttaattaccatttaagcacctttaccatgattagaacaccttatt |
4853434 |
T |
|
| Q |
199 |
ctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatc |
298 |
Q |
| |
|
|||| ||||||||||| ||| |||||||| ||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4853435 |
ctttttccattgctcatataacaattcaaaatatctctcctaaactgttcattacaa----------gacacaacttaaattccaacttaagctattatc |
4853524 |
T |
|
| Q |
299 |
caaagggtttaactagcaactta |
321 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
4853525 |
caaagggtttaactcgcaactta |
4853547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2894012 - 2893768
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaa-tttcattc |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
2894012 |
cttatgtcttggcttataggtcttgctctttccgaaacaactcaactcatttgtgacatactcttacttcatcaaccagcatatacaaaaaatttcattc |
2893913 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattc |
199 |
Q |
| |
|
|||||||||||||||||| | |||||| | |||||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| |
|
|
| T |
2893912 |
cagtccctgcacccgaagtttatcatttgccaatttaagcacctccaaaacagcttaattaccatttaagctcttttaccatgattagaacagcttattc |
2893813 |
T |
|
| Q |
200 |
tttctccattgctcacataccaattcaacatatccctcctgaact |
244 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
2893812 |
tttttccattgctcatataccaattcaacatatccctcctaaact |
2893768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 6734905 - 6734597
Alignment:
| Q |
19 |
ggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatt-tcattccagtccctgcacccgaag |
117 |
Q |
| |
|
|||||| | ||||| ||||||| ||||| || |||||||||||||| |||| || || ||||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
6734905 |
ggtctttccctttctaaaacaactcaacccacttgtgacatactcttacttaatgaaccagcatatacaaaaattctcatttcagtccctgcaccagaag |
6734806 |
T |
|
| Q |
118 |
ctcgacatttggctatttaagcacttccaaa-acagcttaattaccatttaagcacctttaccatgattataacagcttattctttctccattgctcaca |
216 |
Q |
| |
|
|| |||||| ||||||||||||| ||| ||||||||||||| |||||||||| ||| || | || |||||||||| ||| ||||| |||| | |
|
|
| T |
6734805 |
ttcattgtttggccatttaagcacttcaaaatacagcttaattacaatttaagcacttttgtaattactagaacagcttataattttaccattactcata |
6734706 |
T |
|
| Q |
217 |
taccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatccaaagggtttaactagca |
316 |
Q |
| |
|
||||| || |||||||| |||| | ||||||||||||| |||||| |||| ||| || |||||| |||||||||| ||||||||| | | ||||| || |
|
|
| T |
6734705 |
taccagtttaacatatctctccaaatctgttcatcacaaaataatatctgaaacagctcaaattcaaacttaagctcttatccaaacagctcaactaaca |
6734606 |
T |
|
| Q |
317 |
acttatgac |
325 |
Q |
| |
|
||||||||| |
|
|
| T |
6734605 |
acttatgac |
6734597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 28035267 - 28035444
Alignment:
| Q |
5 |
tgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttc-attccagt |
103 |
Q |
| |
|
|||||||| |||||||||| | ||||| ||||| ||||||||||||||||||||| | |||||||||| ||||||| ||||||||||| ||| |||| |
|
|
| T |
28035267 |
tgtcttggcttataggtctttccttttccgaaacatctcaactcagttgtgacatactgttacttcatcaaccagcatacacaaaaatttccatttcagt |
28035366 |
T |
|
| Q |
104 |
ccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccat |
181 |
Q |
| |
|
||||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28035367 |
ccctgcaccagaagttcaccgtttggctatttaagcacttccaaaacagcttaattaccatttaagcacttttaccat |
28035444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 18112163 - 18112339
Alignment:
| Q |
125 |
tttggctatttaagcacttccaaaacagcttaattaccatttaagcacctttaccatgattataacagcttattctttctccattgctcacataccaatt |
224 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||||||||||||||||| ||| ||| | || |||||||||| ||| || || |||| |||||||| |
|
|
| T |
18112163 |
tttggccacttaagcacttccaaaccagcttaattaccatttaagcacttttgtcattaataaaacagcttatcattttaccgttactcatataccaata |
18112262 |
T |
|
| Q |
225 |
caacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaacttaagctattatccaa |
301 |
Q |
| |
|
|| ||| | | ||| | || ||||||||| | |||||||| ||| || ||||||||||||||||| |||||||| |
|
|
| T |
18112263 |
taatatacctcccctaagttggtcatcacaaaactatacctgaaacagctcaaattccaacttaagcttttatccaa |
18112339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 292
Target Start/End: Complemental strand, 8055792 - 8055688
Alignment:
| Q |
188 |
aacagcttattctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaacttaaattccaactt |
287 |
Q |
| |
|
|||||||||| |||| | ||| |||| ||||||||| || ||||| |||| | ||||||||| ||||| ||||| || ||| || |||||||||||| |
|
|
| T |
8055792 |
aacagcttatcatttcacaattactcagataccaatttaatatatctttcctaagttgttcatcaaaagattatacccgaaacagctcaaattccaactt |
8055693 |
T |
|
| Q |
288 |
aagct |
292 |
Q |
| |
|
||||| |
|
|
| T |
8055692 |
aagct |
8055688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 37368338 - 37368182
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttc-attc |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
37368338 |
cttatgtcttggcttataggtcttgctctttccaaaacaactcaactcatttgtgatgtactcttacttcatcaaccagcatacacaaaaatttcaattt |
37368239 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaa |
157 |
Q |
| |
|
|||||| |||||| |||| || | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
37368238 |
cagtccttgcaccagaagtacgtcgtttggctatttaagcacttcc-aaacagcttaa |
37368182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 41529235 - 41529394
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttc-attc |
99 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||| || |||||||| ||||||||| |||| |||||||||| ||||||| || |||||||| ||| |
|
|
| T |
41529235 |
cttaagtcttggcttatagctcttgctctttccaaaataactcaactcatttgtgacattctcttacttcatcaaccagcatacacgaaaatttcaattt |
41529334 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaatta |
160 |
Q |
| |
|
|||||| |||||| |||| || | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41529335 |
cagtccttgcaccagaagtacgtcgtttggctatttaagcacttcc-aaacagcttaatta |
41529394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 292
Target Start/End: Complemental strand, 25190805 - 25190583
Alignment:
| Q |
70 |
catcaaacagcatatacaaaaatttcattccagtccctgcacccgaagctcgacatttggct-atttaagcacttccaaaacagcttaattaccatttaa |
168 |
Q |
| |
|
|||||| |||||| |||||| || |||| |||||| |||||| |||| || || ||| ||| ||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
25190805 |
catcaaccagcatgcacaaaatttccatttcagtccttgcaccagaagttc-actttttgctcatttaagcacttccaaagcagcttaatcatcatttaa |
25190707 |
T |
|
| Q |
169 |
gcacctttaccatgattataacagcttattctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgac |
268 |
Q |
| |
|
||| ||| || | || |||||||||| |||| | ||| |||| ||||||||| || ||||| |||| | ||||||||| || || ||||| || |
|
|
| T |
25190706 |
tcactttttaaattaatagaacagcttatcatttcacaattactcagataccaatttaatatatctttcctaagttgttcatcaaaaaattatacccgaa |
25190607 |
T |
|
| Q |
269 |
acaacttaaattccaacttaagct |
292 |
Q |
| |
|
||| || ||||||||||||||||| |
|
|
| T |
25190606 |
acagctgaaattccaacttaagct |
25190583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 2696454 - 2696295
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttc-attc |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||| ||||||| | |||||||| ||| |
|
|
| T |
2696454 |
cttatgtcttggcttataggtcttgctctttccaaaacaactcaactcatttgtgacgtactcttacttcatcaaccagcatacatgaaaatttcaattt |
2696355 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaatta |
160 |
Q |
| |
|
|||||| |||||| |||| || | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2696354 |
cagtccttgcaccagaagtacgtcgtttggctatttaagcacttcc-aaacagcttaatta |
2696295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 31331229 - 31331079
Alignment:
| Q |
175 |
ttaccatgattataacagcttattctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaact |
274 |
Q |
| |
|
||||||| | || |||||||||| | | |||||| |||| |||||||||||||||||| ||||| | ||| || |||||||||||||||||| |||||| |
|
|
| T |
31331229 |
ttaccattactagaacagcttataatatttccattactcatataccaattcaacatatctctcctaagctggtcttcacaagataatacctgaaacaact |
31331130 |
T |
|
| Q |
275 |
taaattccaacttaagctattatccaaagggtttaactagcaacttatgac |
325 |
Q |
| |
|
||||||| || ||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
31331129 |
taaattctaatttaagctattatccaaacgaattaaatagcaacttatgac |
31331079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 31337950 - 31337800
Alignment:
| Q |
175 |
ttaccatgattataacagcttattctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctgacacaact |
274 |
Q |
| |
|
||||||| | || |||||||||| | | |||||| |||| |||||||||||||||||| ||||| | ||| || |||||||||||||||||| |||||| |
|
|
| T |
31337950 |
ttaccattactagaacagcttataatatttccattactcatataccaattcaacatatctctcctaagctggtcttcacaagataatacctgaaacaact |
31337851 |
T |
|
| Q |
275 |
taaattccaacttaagctattatccaaagggtttaactagcaacttatgac |
325 |
Q |
| |
|
||||||| || ||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
31337850 |
taaattctaatttaagctattatccaaacgaattaaatagcaacttatgac |
31337800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 2742784 - 2742628
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaattt-cattc |
99 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||||| |||||| ||| || |||||| |||||||||| ||||||| || ||||||| |||| |
|
|
| T |
2742784 |
cttatgtcttggcttatagatcttgctcttcccaaaacaa---aactcatctgtaacgtactctcacttcatcaaccagcatacacgaaaatttccattt |
2742688 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaatta |
160 |
Q |
| |
|
|||||| |||||| |||| || | |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
2742687 |
cagtccttgcaccagaagtacgccgtttgactatttaagcacttccaaaa-agcttaatta |
2742628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 5558613 - 5558772
Alignment:
| Q |
1 |
cttatgtcttggactataggtcttgctctttccaaaacaattcaactcagttgtgacatactctaacttcatcaaacagcatatacaaaaatttc-attc |
99 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||| || |||||||| ||||||| | |||| |||||||||| ||||||| || |||||||| ||| |
|
|
| T |
5558613 |
cttaagtcttggcttatagctcttgctctttccaaaataactcaactcatttgtgacgttctcttacttcatcaaccagcatacacgaaaatttcaattt |
5558712 |
T |
|
| Q |
100 |
cagtccctgcacccgaagctcgacatttggctatttaagcacttccaaaacagcttaatta |
160 |
Q |
| |
|
|||||| |||||| |||| || | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5558713 |
cagtccttgcaccagaagtacgtcgtttggctatttaagcacttcc-aaacagcttaatta |
5558772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 323
Target Start/End: Complemental strand, 34150659 - 34150406
Alignment:
| Q |
70 |
catcaaacagcatatacaaaaattt-cattccagtccctgcacccgaagctcgacatttggct-atttaagcacttccaaaacagcttaattaccattta |
167 |
Q |
| |
|
|||||| |||||| |||||||||| |||| |||||| |||||| |||| || || ||| ||| ||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
34150659 |
catcaaccagcatgcacaaaaatttgcatttcagtccttgcaccagaagttc-actttttgctcatttaagcacttccaaagcagcttaatcatcattta |
34150561 |
T |
|
| Q |
168 |
agcacctttaccatgattataacagcttattctttctccattgctcacataccaattcaacatatccctcctgaactgttcatcacaagataatacctga |
267 |
Q |
| |
|
| ||| ||| ||| | || ||||| |||| |||| | ||| |||| ||||||||| || ||||| |||| | ||||||||| || || ||||| || |
|
|
| T |
34150560 |
atcactttttacattaatagaacaggttatcatttcacaattactcagataccaatttaatatatctttcctaagttgttcatcaaaaaattatacccga |
34150461 |
T |
|
| Q |
268 |
cacaacttaaattccaacttaagctattatccaaagggtttaactagcaacttatg |
323 |
Q |
| |
|
|| || ||||||||||||||||| || ||||| | ||||||||||||||||| |
|
|
| T |
34150460 |
aaccgctcaaattccaacttaagct-ttgcccaaacagcttaactagcaacttatg |
34150406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University