View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11606_low_5 (Length: 251)
Name: NF11606_low_5
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11606_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 72 - 251
Target Start/End: Complemental strand, 42212318 - 42212137
Alignment:
| Q |
72 |
atagaataacaatattttatcaaaagtgtgtctcgttgtaattttatcaactgtgacgttattgaacttcaacaaaatcaaagttaccactgtcattcta |
171 |
Q |
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| T |
42212318 |
atagaataacaatattttatcaaaagtgtgtctcgtcgtaattttatcaactgtgacgttattgaacttcaacaagatcaaagttaccactgtcattcta |
42212219 |
T |
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| Q |
172 |
catcaacaattaaaacatatttaaagctgatccattatcac--ttagattgctacatgcatttgtgaataatatattcaaat |
251 |
Q |
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| T |
42212218 |
catcaacaattaaaacatatttaaagctgatccattatcactattagattgctacatgcatttgtgaataatatattcaaat |
42212137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42212425 - 42212352
Alignment:
| Q |
1 |
gtcatcgcgattttgtcaaaaacgacaatttagaacttcaacaaaaccacattcaaattcaactgcattaaata |
74 |
Q |
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| T |
42212425 |
gtcatcgcgattttgtcaaaaacgacaatttagaacttcaacaaaaccacattcaaattcaactgcattaaata |
42212352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 42205169 - 42205029
Alignment:
| Q |
112 |
attttatcaactgtgacgttattgaacttcaacaaaatcaaagttaccactgtcattctacatcaacaattaaaacatat--ttaaagctgatccattat |
209 |
Q |
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| T |
42205169 |
attttatcaaacatgacgttatcgaacttcgacaaaattaca-ttaccaccgtaattctaca--aacaattaaaacatatatttaaagctgcaccattat |
42205073 |
T |
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| Q |
210 |
cac--ttagattgctacatgca--tttgtgaataatatattcaa |
249 |
Q |
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| T |
42205072 |
cactatcaaattcctacatgcatgtttgagaataatatattcaa |
42205029 |
T |
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