View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11606_low_6 (Length: 246)
Name: NF11606_low_6
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11606_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 54802694 - 54802600
Alignment:
| Q |
135 |
taaattttcatacgaagatattaaataccaacttatagcacagaaaacaaatacaaatttattagtatataaaagtagaagtcaccaatatgttt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54802694 |
taaattttcatacgaagatattaaataccaacttatagcacagaaaacaaatacaaatttattagtatataaaagtagaagtcaccaatatgttt |
54802600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 54802826 - 54802774
Alignment:
| Q |
1 |
aaacaatgctaaaataacttttttggggtcttggtaatgctaaaataacatat |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54802826 |
aaacaatgctaaaataacttttttggggtcttggtaatgctaaaataacatat |
54802774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University