View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11606_low_8 (Length: 239)
Name: NF11606_low_8
Description: NF11606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11606_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 3300803 - 3300946
Alignment:
| Q |
95 |
tacatgacaatgcacacaaaataatatcctgccaaaggttcaaaatgatttatgacaataatagataattagtaaatggaaaataattttataaagtttg |
194 |
Q |
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| T |
3300803 |
tacatgacaatgcacacaaa-taatatcctgccaaaggttcaaaatgatttatgacaataatagataattagtaaatggaaaataatttcataaagtttg |
3300901 |
T |
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| Q |
195 |
acctacttacagaaataattgaatcaaaattggtccccctatgct |
239 |
Q |
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| T |
3300902 |
acctacttacagaaataattgaatcaaaattggtccccctttgct |
3300946 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 3300639 - 3300737
Alignment:
| Q |
1 |
ctattttgttttttgtattttgcaacatcactccaatgatcaattgcttatgcagtaacagtgcagatgattca-gaatccaagtgaataataaataca |
98 |
Q |
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| T |
3300639 |
ctattttgttttttgtattttgcaacatcactccaatgattaattgcttatgcaataacagtgcagatgattcatgaatccaagtgaataataaataca |
3300737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 41388413 - 41388373
Alignment:
| Q |
101 |
acaatgcacacaaaataatatcctgccaaaggttcaaaatg |
141 |
Q |
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| T |
41388413 |
acaatgcacacaaaaagatatcttgccaaaggttcaaaatg |
41388373 |
T |
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