View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11607_high_2 (Length: 406)
Name: NF11607_high_2
Description: NF11607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11607_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 663394 - 663007
Alignment:
| Q |
1 |
ttaatgatccaagggtcactattttctggaacattttcaatggtagtgttatgagaagcaacccaattgagaccatcccaacaatcattatattgcattg |
100 |
Q |
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| T |
663394 |
ttaatgatccaagggtcactattttctggaacattttcaatggtagtgttatgagaagcaacccaattgagaccatcccaacaatcattatattgcgttg |
663295 |
T |
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| Q |
101 |
gaagaaaatgttctggagcttttctatattcaatagaaaaaattagaacatttccttgagaagcaataatgttacaatatttgtgatgatgtgatgcaaa |
200 |
Q |
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| T |
663294 |
gaagaaaatgttctggagcttttctatattcaatagaaaaaattagaacatttccttgagaagcaataatgttacaatatttgtgatgatgtgatgcaaa |
663195 |
T |
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| Q |
201 |
agttgattcacaacaaaatgcaccaccatgaaagtagactaagataggtattttttggttttgatcggttagttttggtaggtaaagtctagcaaagagt |
300 |
Q |
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| T |
663194 |
agttgattcacaacaaaatgcaccaccatgaaagtagactaagataggtattttttggttttgatcggttagttttggtaggtaaagtctagcaaagagt |
663095 |
T |
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| Q |
301 |
gaaggttcattggaaaagagaatgtcttttgatgagacatttgtttcaaggtcttgtggtgaaggtggaaccttaggcatgtcattga |
388 |
Q |
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| T |
663094 |
gaaggttcattggaaaagagaatgtcttttgatgagacatttgtttcaaggtcttgtggtgaaggtgtaaccttaggcatgtcattga |
663007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 339
Target Start/End: Complemental strand, 673124 - 672827
Alignment:
| Q |
51 |
atgagaagcaacccaattgagaccatcccaacaatcattatat--tgcattggaagaaaatgttctggagcttttctatattcaatagaaaaaattagaa |
148 |
Q |
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| T |
673124 |
atgagaagcaacccaatagagaccatcccaacaatcattataacctgca--ggaagataatgctctggagcatttctatgttctatggaagcaatcaaaa |
673027 |
T |
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| Q |
149 |
catttccttgagaagcaataatgttacaatatttgtgatg-atgtgatgcaaaagttgattcacaacaaaatgcaccaccatgaaagtagactaagatag |
247 |
Q |
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| T |
673026 |
tatttgcttgagaagctaagaggttacaatatgcatggtggatg-gatgaatatgctgattcaaagctgaatgcaccaccataaaaataaaccaagatgg |
672928 |
T |
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| Q |
248 |
gtattttttggttttgatcg---------gttagttttggtaggtaaagtctagcaaagagtgaaggttcattggaaaagagaatgtcttttgatgagac |
338 |
Q |
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| T |
672927 |
agagtttttggttttgatcattggtttgtgttagttttggaaggtaaagtctagcagtgaggtaagggtcattggaaaagacaatgtctttggatgagac |
672828 |
T |
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