View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11607_low_6 (Length: 233)

Name: NF11607_low_6
Description: NF11607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11607_low_6
NF11607_low_6
[»] chr3 (3 HSPs)
chr3 (139-211)||(45525836-45525908)
chr3 (164-211)||(7944226-7944273)
chr3 (171-211)||(30320577-30320617)
[»] chr4 (1 HSPs)
chr4 (164-211)||(33748287-33748334)
[»] chr7 (1 HSPs)
chr7 (165-206)||(27923319-27923360)


Alignment Details
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 45525908 - 45525836
Alignment:
Q  139 gatagaaaatccaatcaaatggtggaaaaagttggtccataatgaaccaatatttttacaggttcattctata 211  Q
    ||||||||||| |||||||||||||  ||| ||||||||| ||| |||||||||||||  |||||||| ||||    
T  45525908 gatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatatttttatgggttcattttata 45525836  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 7944273 - 7944226
Alignment:
Q  164 aaaaagttggtccataatgaaccaatatttttacaggttcattctata 211  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||| ||||    
T  7944273 aaaaaattggtccatcatgaaccaatatttttataggttcattttata 7944226  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 30320577 - 30320617
Alignment:
Q  171 tggtccataatgaaccaatatttttacaggttcattctata 211  Q
    |||||||||||||||||||||||||||| || |||| ||||    
T  30320577 tggtccataatgaaccaatatttttacaagtccattttata 30320617  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 33748287 - 33748334
Alignment:
Q  164 aaaaagttggtccataatgaaccaatatttttacaggttcattctata 211  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||| ||||    
T  33748287 aaaaaattggtccatcatgaaccaatatttttataggttcattttata 33748334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 27923319 - 27923360
Alignment:
Q  165 aaaagttggtccataatgaaccaatatttttacaggttcatt 206  Q
    |||| ||||||||| ||||||||||||||||| |||||||||    
T  27923319 aaaaattggtccatcatgaaccaatatttttataggttcatt 27923360  T

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