View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11608_high_2 (Length: 239)
Name: NF11608_high_2
Description: NF11608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11608_high_2 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31913720 - 31913943
Alignment:
| Q |
1 |
caaagttcacaaatttaatatcatacccccaatttgaaatagttcttcttcaaaa-tcaacttatcaaaaccaagctaaagctaaaaaatcagttaaaga |
99 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||| |||| |||| ||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
31913720 |
caaagttcacaaatttaatatcatacccccagtttgtaatagtttatctttaaaaatcaacttatcaaaaccaagctaaagctaaaacaccagttaaaga |
31913819 |
T |
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| Q |
100 |
tatcatccaaatcatacgaaataacacttnnnnnnncaatttttaatgtaaaaatgaactgggtcgttgaagaataccccaaatcaccacaacttcataa |
199 |
Q |
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| T |
31913820 |
aatcatccagatcatacaaaataacacttaaaaaaacaatttttaatgtaaaaatgaactaggtcgttgaagaataccccaaaacaccacaacttcataa |
31913919 |
T |
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| Q |
200 |
ttatgaatactcatggcataaatc |
223 |
Q |
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||||||||||||||| |||||||| |
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| T |
31913920 |
ttatgaatactcatgacataaatc |
31913943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 4315344 - 4315176
Alignment:
| Q |
1 |
caaagttcacaaatttaatatcatacccccaatttgaaatagttcttcttcaaaatcaacttatcaaaaccaagctaaagctaaaaaatcagttaaagat |
100 |
Q |
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||||||||| | |||| || ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||| | | ||||||| |
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| T |
4315344 |
caaagttcagtactttattaccatacccccaattc-aaatagttcatcttcaaaatcaacttatcaaaatcaagctaaagttaaaacacccattaaagaa |
4315246 |
T |
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| Q |
101 |
atcatccaaatcatacgaaataacacttnnnnnnncaatttttaatgt-aaaaatgaactgggtcgttgaa |
170 |
Q |
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| T |
4315245 |
atcattcagatcataagaaataacactt-aaaaaacaatttttagtgtaaaaaatgaactgggtcattgaa |
4315176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 2598 - 2637
Alignment:
| Q |
184 |
caccacaacttcataattatgaatactcatggcataaatc |
223 |
Q |
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| T |
2598 |
caccacaactccataattatgaatacccatggcataaatc |
2637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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