View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11608_low_1 (Length: 250)
Name: NF11608_low_1
Description: NF11608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11608_low_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 31913474 - 31913597
Alignment:
| Q |
124 |
tcttaatgccacttctgccccctcctcggaatataaaacatcttcaatgtctagatgttaccataagacacaatctctcggattccaacacactaataaa |
223 |
Q |
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| T |
31913474 |
tcttaatcccactactgccccctccccggaaaatacaacatcttcaacgtc---atgttaccgtaagacacaatctctcggattccaacacactcataaa |
31913570 |
T |
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| Q |
224 |
aaagacattaaacaatcttcaagcgac |
250 |
Q |
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| T |
31913571 |
aaagacatgaaacaatcttcaagcgac |
31913597 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 31913364 - 31913416
Alignment:
| Q |
14 |
aggcactaactactaaccaaaaactaaaagaatccaattcaatcatatatggc |
66 |
Q |
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||||||||||| |||||||||||||||||| || |||||||||||||||||| |
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| T |
31913364 |
aggcactaactcttaaccaaaaactaaaagactcaaattcaatcatatatggc |
31913416 |
T |
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