View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11609_high_1 (Length: 792)
Name: NF11609_high_1
Description: NF11609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11609_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 471 - 777
Target Start/End: Complemental strand, 54088841 - 54088535
Alignment:
| Q |
471 |
atgtttatttatacaaagaaatagaaaggaagaaacattgaaccatggacacacatgcatatataaggggagaattgaattacaaaatgtatattgaact |
570 |
Q |
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| T |
54088841 |
atgtttatttatacaaagaaatagaaaggaagaaacattgaaccatggacacacatgcatatataaggggagaattgaattacaaaatgtatattgaact |
54088742 |
T |
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| Q |
571 |
aattattgagattatattgttgcttaatcatcacacagtgaaggtgaagttttattataatatggatatgattttacttaatttccacttcctgatccag |
670 |
Q |
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| T |
54088741 |
aattattgaaattatattgttgcttaatcatcacatagtgaaggtgaagttttattataatatggatatgattttacttaatttccacttcctgatccag |
54088642 |
T |
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| Q |
671 |
catgagatcctgcatatgaaccagcttcagagcccgctctagaagaccctgacccagcatgagaccctgcatatgaaccggcttcagaacctgcttcaga |
770 |
Q |
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| T |
54088641 |
catgagatcctgcatatgaaccagcttcagagcccgctctagaagaccctgacccagcatgagaccctgcatatgaaccggcttcagaacctgcttcaga |
54088542 |
T |
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| Q |
771 |
acccgct |
777 |
Q |
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| T |
54088541 |
acccgct |
54088535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 172 - 430
Target Start/End: Complemental strand, 54089175 - 54088916
Alignment:
| Q |
172 |
ggtagtgagacctaagtagtaaagtaaattggagagtggtaatttatggattaaattaaggattatattaaagatcggcatattcttgttttttattcta |
271 |
Q |
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| T |
54089175 |
ggtagtgagacctaagtagtaaagtaaattggagagtggtaatttatggattaaattaaggattatattaaagatcggcatattcttgttttttattcta |
54089076 |
T |
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| Q |
272 |
aagagaagatatgtgtgtgcttgtttcttttacacgtacaaattagagatcatagcttttgaattaatcatgactgaaaatgaaatttggaatgatataa |
371 |
Q |
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| T |
54089075 |
aagagaagatatgtgtgtgtttgtttctttcacacgtacaaattagagatcatagcttttgaattaatcatgactgaaaatgaaatttggaatgatataa |
54088976 |
T |
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| Q |
372 |
taaggc-tcaaagtgtcgtttggataagcatccaagttcctacatcaatttaaaggattt |
430 |
Q |
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| T |
54088975 |
taaggcagcaaagtgtcgtttggataagcatccaagttcctacatcaatttaaaggattt |
54088916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 54089530 - 54089384
Alignment:
| Q |
3 |
aaagatattgtaaatatgatgtgtgtgtacacacaaaagaaatgtaacaatatgtcctttaaaaaatatatgtaacaatacacacaccgatctttctttt |
102 |
Q |
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| T |
54089530 |
aaagatattgtaaatatgatgtgtgtgtacacacaacagaaatgtaacaatatgtcctttaaaaaatatatgtaacaatacacacaccgatctttctttt |
54089431 |
T |
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| Q |
103 |
tgcccataaaagatacgtgaaaaaattgagtcttcccttttcaattg |
149 |
Q |
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| T |
54089430 |
tgcttataaaagatacgtgaaaaaattgagtcttcccttttcaattg |
54089384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 688 - 765
Target Start/End: Complemental strand, 54088555 - 54088478
Alignment:
| Q |
688 |
gaaccagcttcagagcccgctctagaagaccctgacccagcatgagaccctgcatatgaaccggcttcagaacctgct |
765 |
Q |
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| T |
54088555 |
gaacctgcttcagaacccgctccagaagaccctgacccagcatgagaacctgcatatgaaccggcttcagaacctgct |
54088478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 458
Target Start/End: Complemental strand, 54088887 - 54088856
Alignment:
| Q |
427 |
atttagcatgagaaccaagagtctccgctcgt |
458 |
Q |
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| T |
54088887 |
atttagcatgagaaccaagagtctccgctcgt |
54088856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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