View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11609_high_3 (Length: 283)
Name: NF11609_high_3
Description: NF11609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11609_high_3 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 18233558 - 18233362
Alignment:
| Q |
1 |
ataacccctagccaaccaaagacctattaccgcatcaaacactcttgcggattccaactccactcatagtataaacaagtttgcatagagattctactca |
100 |
Q |
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| T |
18233558 |
ataacccctagccaaccaaagacctattaccgaatcaaacactcttgcggattccaactccactcatagtataaacaagtttgcatagagattctactca |
18233459 |
T |
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| Q |
101 |
aactccaccgccacgacatcacatttatttccggtaataattcgtcaacgtatttcacctcattctagaaaataatgtggttcctagctttccaaat |
197 |
Q |
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| T |
18233458 |
aactccacagccacgacatcacatttatttccggtaataattcgtcaacgtatttcacctcattccggaaaataatgtggttcctagctttccaaat |
18233362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 41195059 - 41195285
Alignment:
| Q |
28 |
taccgcatcaaacactcttgcggattccaactccactcatagtataaacaagtttgcatagagattctactcaaactccaccgccacgacatcacattta |
127 |
Q |
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| T |
41195059 |
taccgcatcaagcactcttgtggattccaattccactcataaaaaaggcaagtttgaatagaaagtttactcaaactccacctccaagacatcaccatta |
41195158 |
T |
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| Q |
128 |
tttccggtaataattcgtcaacgtatttcacctcattctagaaaataatgtggttcctagctttccaaatagcccaaatggtagcataccaaatcatcca |
227 |
Q |
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| T |
41195159 |
tttccgacaataattcatcaacatatttcaattcattccggaaaataatgtaatttctcgcttgccaaataacccaaatagtagcatgccaaataatcca |
41195258 |
T |
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| Q |
228 |
caacccctttcgaatcctcttatttct |
254 |
Q |
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| T |
41195259 |
caatcccttacgaattctcttatttct |
41195285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 18233367 - 18233317
Alignment:
| Q |
216 |
ccaaatcatccacaacccctttcgaatcctcttatttcttccctcattact |
266 |
Q |
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| T |
18233367 |
ccaaatcatccacaacccctttcgaatcctcttaattctcccctcattact |
18233317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 520016 - 520255
Alignment:
| Q |
27 |
ttaccgcatcaaacactcttgcggattccaactccactcatagtataaacaagtttgcatagagattctactcaaactccaccgccacgacatcacattt |
126 |
Q |
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| T |
520016 |
ttacctcatcaaacattcttgaggattccaattccattcatagtatagacaagtttgcataacaagcctagtcaaacaccaccgcctcgacaacaccatt |
520115 |
T |
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| Q |
127 |
atttccggtaataattcgtcaacgtatttcacctcattctagaaaataatgtggttcctagctttccaaatagcccaaatggtagcataccaaatcatcc |
226 |
Q |
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| T |
520116 |
atttccgacaataattcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatcc |
520215 |
T |
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| Q |
227 |
acaacccctttcgaatcctcttatttcttccctcattact |
266 |
Q |
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| T |
520216 |
ccaaccccttccgaaccttcttatttcctccaacattact |
520255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 9359437 - 9359510
Alignment:
| Q |
181 |
ttcctagctttccaaatagcccaaatggtagcataccaaatcatccacaacccctttcgaatcctcttatttct |
254 |
Q |
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| T |
9359437 |
ttcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccccttgcgaatcttcttgtttct |
9359510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 24945446 - 24945343
Alignment:
| Q |
151 |
tatttcacctcattctagaaaataatgtggttcctagctttccaaatagcccaaatggtagcataccaaatcatccacaacccctttcgaatcctcttat |
250 |
Q |
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||||||||||||||| ||||||| || || ||||||| |||||| | |||||| || |||| |||||| |||||||||||||| || |||||||||| |
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| T |
24945446 |
tatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaaccccttacggatcctcttat |
24945347 |
T |
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| Q |
251 |
ttct |
254 |
Q |
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|||| |
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| T |
24945346 |
ttct |
24945343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 4028524 - 4028472
Alignment:
| Q |
26 |
attaccgcatcaaacactcttgcggattccaactccactcatagtataaacaa |
78 |
Q |
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| T |
4028524 |
attaccgcaccagacactcttgcggattccaagtccattcgtagtacaaacaa |
4028472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 2308207 - 2308119
Alignment:
| Q |
178 |
tggttcctagctttccaaatagcccaaatggtagcataccaaatcatccacaacccctttcgaatcctcttatttcttccctcattact |
266 |
Q |
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| T |
2308207 |
tggttcctcgcttgccaaatagcccatatagttgcatgccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattact |
2308119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 43805601 - 43805524
Alignment:
| Q |
40 |
cactcttgcggattccaactccactcatagtataaacaagtttgcatagagattctactcaaactccaccgccacgac |
117 |
Q |
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| T |
43805601 |
cactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgccacgac |
43805524 |
T |
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