View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11609_high_4 (Length: 280)
Name: NF11609_high_4
Description: NF11609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11609_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 38784240 - 38784353
Alignment:
| Q |
146 |
aaagtgagattaagagtgttagagaaaatgttggacaaagaattactttggttaaagtcagggcaatgtcaaggcataggagacatggaggaagacttag |
245 |
Q |
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| T |
38784240 |
aaagggagattaagagtgttagagaaaatgttggacaaagaattactttgattaaagagagggcaatgtcaaggcataggagacatggaggaagacttag |
38784339 |
T |
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| Q |
246 |
aaacatgtaatcaa |
259 |
Q |
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| T |
38784340 |
aaacatgtaatcaa |
38784353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 38742230 - 38742127
Alignment:
| Q |
146 |
aaagtgagattaagagtgttagagaaaatgttggacaaagaattactttggttaaagtcagggcaatgtcaaggcataggagacatggaggaagacttag |
245 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38742230 |
aaagggagattaagagtgttagagaaaatgttggacaaagaattactttgattaaagagagggcaatgtcaaggcataggagacatggaggaagacttag |
38742131 |
T |
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| Q |
246 |
aaac |
249 |
Q |
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|||| |
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| T |
38742130 |
aaac |
38742127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 38789540 - 38789651
Alignment:
| Q |
1 |
agtagcaaaggaaaaagagatgaatctattgagataggaaaatgaaagaaagactctagagtt---gagtatacgtgcattgtaaaaagaggagcattaa |
97 |
Q |
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| T |
38789540 |
agtagcatagaaataagagaggaatctattgagataggataatgaaaaaaagactctagagttcaaaagtatacgtgcattgtaaaaagaggtgtattaa |
38789639 |
T |
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| Q |
98 |
gatgttctacta |
109 |
Q |
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| T |
38789640 |
gatgttctacta |
38789651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 38790406 - 38790453
Alignment:
| Q |
155 |
ttaagagtgttagagaaaatgttggacaaagaattactttggttaaag |
202 |
Q |
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| T |
38790406 |
ttaagagtgttagtgaaaatgttggacaaagaattactttggttaaag |
38790453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 38790534 - 38790579
Alignment:
| Q |
217 |
aggcataggagacatggaggaagacttagaaacatgtaatcaagaa |
262 |
Q |
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| T |
38790534 |
aggcataggagacattgagaaagacttaaaaacatgtaatcaagaa |
38790579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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