View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11609_low_2 (Length: 300)
Name: NF11609_low_2
Description: NF11609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11609_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 42699854 - 42699576
Alignment:
| Q |
1 |
accatttggacaaacatttttaaacatatagaagaacaaaaatatgcaacaaaatttacaaggaaaatatatacgtatatataaagccattcatggcttt |
100 |
Q |
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| T |
42699854 |
accatttggacaaacatttttaaacatatagaagaacaaaaa-atgcaacaaaatttacaaggaaaatatatatgtatatataaagccattcatggcttt |
42699756 |
T |
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| Q |
101 |
tcagtttgagaatattaagtttttgagacaagaaacaaatttcttacatgtttttgaggaaggaaagaatagtggagtagaatctaagagagcatagtat |
200 |
Q |
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| T |
42699755 |
tcagtttgagaatattaagtttttgagacaagaaacaaatttcttacatgtttttgaggaaggaaagaatagtggagtagaatctaagagagcatagtat |
42699656 |
T |
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| Q |
201 |
aggaagagaaagctattatgatgagnnnnnnnntctgacagtagcatatagaataatgaatgagaaatagcccttatatt |
280 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42699655 |
aggaagagaaagctattatgatgagaaaaaaaatctgacagtagcatatagaataatgaatgagaaatagcccttatatt |
42699576 |
T |
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