View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1160_high_2 (Length: 444)
Name: NF1160_high_2
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1160_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Complemental strand, 4665146 - 4664737
Alignment:
| Q |
14 |
aggcagctgaaaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatatgaaggacgttatcaacactatatttcctaatgt |
113 |
Q |
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| T |
4665146 |
aggcagctgaaaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatctgaaggacgttatcaacactatatttcctaatgt |
4665047 |
T |
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| Q |
114 |
gatgagaagaagcaagtaaattgtcacactagggtgtttgtgttgtggagatacctatataaatttgtaaatgtgttatgtaaaatatgattcattataa |
213 |
Q |
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| T |
4665046 |
gatgagaagaagcaagtaaattgtcacactagggtgtttgtgttgtggagatacctatataaatttgtaaatgtgttatgtaaaatatgattcattataa |
4664947 |
T |
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| Q |
214 |
ttaatatgcacgtagtgtttcttctttttggtgtgaagtaacttgtgtataggttacatatcgttagatac--------atgattttcctttttcttgac |
305 |
Q |
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| T |
4664946 |
ttaatatgcacgtagtgtttcttctttttggtgtgaagtaacttgtgtataggttacatatcgttagatacatactggtatgattttcctttttcttgac |
4664847 |
T |
|
| Q |
306 |
aaaacttgtatggttttattgaagatatattatccaatttctctttttccagaatctctcttataatctgcatatctacgatgctgtaaaggatccatgt |
405 |
Q |
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| T |
4664846 |
ataacttgtatggttttattgaagatatattatccaatttctctttttccagaatctctcttataatctgcatatctacgatgctgtaaaggatccatgt |
4664747 |
T |
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| Q |
406 |
aaatggaaga |
415 |
Q |
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| T |
4664746 |
aaatggaaga |
4664737 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 43267526 - 43267588
Alignment:
| Q |
24 |
aaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatatgaagga |
86 |
Q |
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| T |
43267526 |
aaaagctttaggaactgaaggtctagaaaatattaaagtagtaggttgcaagaatctgaagga |
43267588 |
T |
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