View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1160_high_4 (Length: 396)

Name: NF1160_high_4
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1160_high_4
NF1160_high_4
[»] chr1 (13 HSPs)
chr1 (222-368)||(46031453-46031599)
chr1 (187-258)||(30413101-30413172)
chr1 (176-262)||(30097564-30097650)
chr1 (322-368)||(30413009-30413055)
chr1 (320-368)||(20012821-20012869)
chr1 (176-248)||(20012926-20012998)
chr1 (320-368)||(24969902-24969950)
chr1 (320-368)||(25430753-25430801)
chr1 (320-364)||(30097690-30097734)
chr1 (197-248)||(24969794-24969845)
chr1 (197-248)||(25430858-25430909)
chr1 (133-167)||(30413742-30413776)
chr1 (120-150)||(30413841-30413871)
[»] scaffold0046 (2 HSPs)
scaffold0046 (176-261)||(87107-87192)
scaffold0046 (320-368)||(87015-87063)
[»] chr6 (1 HSPs)
chr6 (227-334)||(22689688-22689795)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 222 - 368
Target Start/End: Complemental strand, 46031599 - 46031453
Alignment:
Q  222 agtggactggttgtttgttttggtgaaatggtaatagattttgtgccaacagtgggtggagtgtctctagccgaagcgcctgttttcaagaaatctactg 321  Q
    ||||||||||| ||||||||||||||| || | |||||||||||||| || |||||||||||||||||||||||||| |||| |||||||||| || |||    
T  46031599 agtggactggtcgtttgttttggtgaattgttgatagattttgtgcctacggtgggtggagtgtctctagccgaagcacctgctttcaagaaagctcctg 46031500  T
Q  322 gtggtgctcctgcaaacgtggcagttggcatctctaagttggggggt 368  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  46031499 gtggtgctcctgcgaacgtggcagttggcatctctaggttggggggt 46031453  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 30413172 - 30413101
Alignment:
Q  187 ctgatgatctcataacagaaggctgcaacaaaacgagtggactggttgtttgttttggtgaaatggtaatag 258  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  30413172 ctgatgatctcctaacagaaggctgcaacgaaacaagtggactggttgtttgttttggtgaaatgttaatag 30413101  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 30097564 - 30097650
Alignment:
Q  176 ctacagattacctgatgatctcataacagaaggctgcaacaaaacgagtggactggttgtttgttttggtgaaatggtaatagattt 262  Q
    ||||| ||||||||||  || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| || | ||||||||    
T  30097564 ctacaaattacctgattttcccataacagaaggctgcagcaaaacaagtggactggttgtttgttttggtgaactgttgatagattt 30097650  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 30413055 - 30413009
Alignment:
Q  322 gtggtgctcctgcaaacgtggcagttggcatctctaagttggggggt 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30413055 gtggtgctcctgcaaacgtggcagttggcatctctaagttggggggt 30413009  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 20012869 - 20012821
Alignment:
Q  320 tggtggtgctcctgcaaacgtggcagttggcatctctaagttggggggt 368  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  20012869 tggtggtgctattgcaaacgtggcagttggcatctctaagttggggggt 20012821  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 20012998 - 20012926
Alignment:
Q  176 ctacagattacctgatgatctcataacagaaggctgcaacaaaacgagtggactggttgtttgttttggtgaa 248  Q
    ||||| ||||||||||  || | |||||||||||| || |||||| |||||||||||||||||||||||||||    
T  20012998 ctacaaattacctgattttcccgtaacagaaggctacagcaaaacaagtggactggttgtttgttttggtgaa 20012926  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 24969902 - 24969950
Alignment:
Q  320 tggtggtgctcctgcaaacgtggcagttggcatctctaagttggggggt 368  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  24969902 tggtggtgctattgcaaacgtggcagttggcatctctaagttggggggt 24969950  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 25430801 - 25430753
Alignment:
Q  320 tggtggtgctcctgcaaacgtggcagttggcatctctaagttggggggt 368  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  25430801 tggtggtgctattgcaaacgtggcagttggcatctctaagttggggggt 25430753  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 30097690 - 30097734
Alignment:
Q  320 tggtggtgctcctgcaaacgtggcagttggcatctctaagttggg 364  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  30097690 tggtggtgctattgcaaacgtggcagttggcatctctaagttggg 30097734  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 24969794 - 24969845
Alignment:
Q  197 cataacagaaggctgcaacaaaacgagtggactggttgtttgttttggtgaa 248  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||| ||||    
T  24969794 cataacagaaggctgcagcaaaactggtggactggttgtttgttttgatgaa 24969845  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 25430909 - 25430858
Alignment:
Q  197 cataacagaaggctgcaacaaaacgagtggactggttgtttgttttggtgaa 248  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||| ||||    
T  25430909 cataacagaaggctgcagcaaaactggtggactggttgtttgttttgatgaa 25430858  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 30413776 - 30413742
Alignment:
Q  133 aataaccatgattatagataggttgattttcattt 167  Q
    |||||||||||||||||||||||||||||| ||||    
T  30413776 aataaccatgattatagataggttgattttaattt 30413742  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 30413871 - 30413841
Alignment:
Q  120 gtgatcatatagtaataaccatgattataga 150  Q
    |||||||||||||||||||||||||||||||    
T  30413871 gtgatcatatagtaataaccatgattataga 30413841  T

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Target: scaffold0046 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 87192 - 87107
Alignment:
Q  176 ctacagattacctgatgatctcataacagaaggctgcaacaaaacgagtggactggttgtttgttttggtgaaatggtaatagatt 261  Q
    ||||| ||||||||||  || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| || | |||||||    
T  87192 ctacaaattacctgattttcccataacagaaggctgcagcaaaacaagtggactggttgtttgttttggtgaactgttgatagatt 87107  T

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Target: scaffold0046; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 87063 - 87015
Alignment:
Q  320 tggtggtgctcctgcaaacgtggcagttggcatctctaagttggggggt 368  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  87063 tggtggtgctattgcaaacgtggcagttggcatctctaagttggggggt 87015  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 334
Target Start/End: Original strand, 22689688 - 22689795
Alignment:
Q  227 actggttgtttgttttggtgaaatggtaatagattttgtgccaacagtgggtggagtgtctctagccgaagcgcctgttttcaagaaatctactggtggt 326  Q
    |||||||||||  ||||| |||||| | ||||| ||||||||||| ||||| |||||||| || ||||| || || | ||||||||||||| |||||||     
T  22689688 actggttgtttcctttggggaaatgttgatagactttgtgccaactgtgggaggagtgtcgctcgccgaggcaccggctttcaagaaatctcctggtgga 22689787  T
Q  327 gctcctgc 334  Q
    ||||||||    
T  22689788 gctcctgc 22689795  T

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