View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1160_high_7 (Length: 267)
Name: NF1160_high_7
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1160_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 38822797 - 38822597
Alignment:
| Q |
45 |
aggcatatccataacagtagcagcaagtggtccaagttcaaatgcatttat---gtatccaatcccacactgcttctctaacttaaccaatttatctttg |
141 |
Q |
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| T |
38822797 |
aggcatatccataacagtagcagcaagtggtccaagttcaaatgcatttattatgtatccaatcccacactgcttctctaacttaaccaatttatctttg |
38822698 |
T |
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| Q |
142 |
ataccaacgcctacaaaggtataatctggcatagagagaaaattatgcatcaatggaagaggtaaaaatctatgaaaataattaccacttagcagaataa |
241 |
Q |
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| T |
38822697 |
ataccaacgcctacaaaggtataatctggcatagagagaaaattatgcatcaatggaagaggtaaaaatctatgaaaacaattaccaattagcagaataa |
38822598 |
T |
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| Q |
242 |
t |
242 |
Q |
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| T |
38822597 |
t |
38822597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 38831259 - 38831149
Alignment:
| Q |
62 |
tagcagcaagtggtccaagttcaaatgcatttatgtatccaatcccacactgcttctctaacttaaccaatttatctttgataccaacgcctacaaaggt |
161 |
Q |
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| T |
38831259 |
tagcagcaagaggtccaagttccacagcatttctgcatctaatcccatattccttcttaagcttagccaaatcatctttaataccaacactgacaaaggt |
38831160 |
T |
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| Q |
162 |
ataatctggca |
172 |
Q |
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| T |
38831159 |
ataatctggca |
38831149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 38814246 - 38814142
Alignment:
| Q |
54 |
cataacagtagcagcaagtggtccaagttcaaatgcatttatgtatccaatcccacactgcttctctaacttaaccaatttatctttgataccaacgcct |
153 |
Q |
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| T |
38814246 |
cataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactcca |
38814147 |
T |
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| Q |
154 |
acaaa |
158 |
Q |
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||||| |
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| T |
38814146 |
acaaa |
38814142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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