View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1160_low_1 (Length: 489)
Name: NF1160_low_1
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1160_low_1 |
 | |
|
| [»] scaffold0118 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 13715989 - 13715531
Alignment:
| Q |
1 |
ggtgagccattggtgcagtctctaagcattcctactcatttgcatgcttagctgaacatgaaggtgtcatattacattgtgcaccaacaatggcagattc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13715989 |
ggtgagccattggtgaagtctctaagcattcctactcatttgcatgcttagctgaacatgaaggtgtcatattacatcgtgcaccaacaatggcagattc |
13715890 |
T |
|
| Q |
101 |
cctcatacattagccgtaaatatcctactttgacggtgctgatacaaaatacgactctttgcattgaacctcaaaatgactgtttgcattggcttcactc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13715889 |
cctcatacattagccctaaatatcctactttgacggtgctgatacaaaataccactctttgcattgaacctcaaaatgactgtttgcattggcttcactc |
13715790 |
T |
|
| Q |
201 |
tatggatggggatttgtccaacaagttagcttatgattttctgaatacgaatcaagttgagttggtgcaagtttatttgaaatgcctttgtccccacccc |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13715789 |
tatggatggggatttgtctaacaagttagcttatgattttctgaatacgaatcaagttgagttggtgcaagtttatttggaatgcctttgtccccacccc |
13715690 |
T |
|
| Q |
301 |
ccacatnnnnnnnnnnnnnnnntcgggccttcatttgtttggagattggctcatcataagcttctaactaatgaccagttacgaataagagggtgtattt |
400 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13715689 |
ccacat--acacacacacacactcgggccttcatttgtttaaagattggctcatcaaaagcttctaactgatgaccagttacgaataagagggtgtattt |
13715592 |
T |
|
| Q |
401 |
tggtctctgcttgttgcttctgctatatgacagctgagcacattatttttaattgctctgt |
461 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13715591 |
tggtctctgtttgttgcttctgctatatgacagctgagcacattatttttaattgctctgt |
13715531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 36257 - 36099
Alignment:
| Q |
1 |
ggtgagccattggtgcagtctctaagcattcctactcatttgcatgcttagctgaacatgaaggtgtcatattacattgtgcaccaacaatggcagattc |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| | ||||| |||||| ||||| |||||||||||||| |||||||| ||||||| ||||||| ||||| |
|
|
| T |
36257 |
ggtgagccgttggtgcagtctctcagcattccttcacattttcatgctcagctggacatgaaggtgtcagattacattctgcaccatcaatggcggattc |
36158 |
T |
|
| Q |
101 |
cctcatacattagccgtaaatatcctactttgacggtgctgatacaaaatacgactctt |
159 |
Q |
| |
|
|| | |||||||| |||||||||||| |||||||| | |||||||||||| |||||| |
|
|
| T |
36157 |
ccacctacattagttctaaatatcctaccttgacggttcagatacaaaataccactctt |
36099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University