View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1160_low_15 (Length: 263)

Name: NF1160_low_15
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1160_low_15
NF1160_low_15
[»] chr1 (6 HSPs)
chr1 (7-195)||(47535396-47535584)
chr1 (189-252)||(10711089-10711152)
chr1 (189-257)||(30110853-30110921)
chr1 (189-250)||(26720812-26720873)
chr1 (189-258)||(47106609-47106677)
chr1 (189-257)||(17708123-17708191)
[»] chr8 (3 HSPs)
chr8 (191-257)||(23680306-23680372)
chr8 (189-250)||(45255756-45255817)
chr8 (189-252)||(17658980-17659043)
[»] chr5 (4 HSPs)
chr5 (191-250)||(20208649-20208708)
chr5 (201-258)||(6049366-6049423)
chr5 (191-252)||(7000695-7000756)
chr5 (189-252)||(4415628-4415691)
[»] chr3 (6 HSPs)
chr3 (189-258)||(47537411-47537480)
chr3 (191-250)||(26846018-26846077)
chr3 (186-250)||(50544375-50544439)
chr3 (195-234)||(19222260-19222299)
chr3 (189-257)||(33121245-33121313)
chr3 (189-257)||(48191943-48192011)
[»] scaffold0179 (2 HSPs)
scaffold0179 (191-250)||(7679-7738)
scaffold0179 (191-250)||(12613-12672)
[»] scaffold0007 (1 HSPs)
scaffold0007 (189-250)||(182280-182341)
[»] chr4 (8 HSPs)
chr4 (189-250)||(20395747-20395808)
chr4 (189-258)||(53780188-53780257)
chr4 (189-257)||(30273740-30273808)
chr4 (189-250)||(10563237-10563298)
chr4 (191-252)||(42778387-42778448)
chr4 (189-257)||(53486881-53486949)
chr4 (189-257)||(34322247-34322315)
chr4 (189-257)||(18106484-18106552)
[»] chr6 (5 HSPs)
chr6 (189-250)||(17873746-17873807)
chr6 (189-257)||(17079119-17079187)
chr6 (191-250)||(11060789-11060848)
chr6 (193-250)||(18051381-18051438)
chr6 (191-252)||(9199182-9199243)
[»] chr7 (3 HSPs)
chr7 (189-250)||(4077426-4077487)
chr7 (191-250)||(7458601-7458660)
chr7 (189-257)||(34231843-34231911)
[»] chr2 (2 HSPs)
chr2 (191-252)||(1380231-1380292)
chr2 (189-257)||(2999676-2999744)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 47535584 - 47535396
Alignment:
Q  7 ccatgcacaattgtaattgtaattactcacaaactgcatgggctccctaaaatgtgcggttaatctacaacggcatagcctctaagaataaaagctaata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47535584 ccatgcacaattgtaattgtaattactcacaaactgcatgggctccctaaaatgtgcggttaatctacaacggcatagcctctaagaataaaagctaata 47535485  T
Q  107 gattggaccattttaactgacgtatgtgtcaatatgcaaaaatgaagattactatgataaatatcacaatttggaggacgaatttgttt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47535484 gattggaccattttaactgacgtatgtgtcaatatgcaaaaatgaagattactatgataaatatcacaatttggaggactaatttgttt 47535396  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 10711089 - 10711152
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 252  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  10711089 tttgtttcagacaggtgggtgtggttgccagaccctgttgagggttacactgttcgtggttcat 10711152  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 30110853 - 30110921
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||| ||||    
T  30110853 tttgtttcagataggtgggtgtggttaccagacccttttgaggggtacacagttcggggttcatatcac 30110921  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 26720873 - 26720812
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  26720873 tttgtttcagacaggtgggtgtggtcgtcagaccctgttgagggttacactgttcgcggttc 26720812  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 47106609 - 47106677
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 258  Q
    |||||||| || |||||||||||||||||||||||||||||||| |  || ||||||||||||| |||||    
T  47106609 tttgtttccgacaggtgggtgtggttgccagaccctgttgaggggt-tactgttcgcggttcatatcact 47106677  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 17708191 - 17708123
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    ||||||||||| || ||||||||||||||| ||||| ||| ||||||| | ||||| ||||||| ||||    
T  17708191 tttgtttcagacagatgggtgtggttgccaaacccttttgtgggttactctgttcgtggttcatatcac 17708123  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 23680372 - 23680306
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  23680372 tgtttcagacaggtgggtgtggttgccagaccctgttgagggttacactgttcgcggttcatatcac 23680306  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 45255756 - 45255817
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| || || |||||||||||    
T  45255756 tttgtttcagacaggtgggtgtggttgccagaccctattgagggctatactgttcgcggttc 45255817  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 17659043 - 17658980
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 252  Q
    |||||||| || ||||||||||||||||  |||||| ||||||||||||| ||| | |||||||    
T  17659043 tttgtttctgacaggtgggtgtggttgcttgaccctattgagggttacactgtttgtggttcat 17658980  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 20208649 - 20208708
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20208649 tgtttcagacaggtgggtgtggttgccagaccctgttgagggttacactgttcgcggttc 20208708  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 6049423 - 6049366
Alignment:
Q  201 aggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 258  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |||||    
T  6049423 aggtgggtgtggttgccagaccctgttaagggttatactgttcgcggttcatatcact 6049366  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 7000695 - 7000756
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 252  Q
    ||||||||| | |||||||||||||||||||||   |||||||||||| |||||||||||||    
T  7000695 tgtttcagacaagtgggtgtggttgccagaccccactgagggttacactgttcgcggttcat 7000756  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 4415628 - 4415691
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 252  Q
    |||||||| || |||||||||||||||||||||||| | | ||||||| | ||||| |||||||    
T  4415628 tttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcat 4415691  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 47537480 - 47537411
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 258  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  47537480 tttgttttagacaggtgggtgtggttgccagaccctgttgagggttacactgttcgtggttcatatcact 47537411  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 26846077 - 26846018
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  26846077 tgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttc 26846018  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 50544439 - 50544375
Alignment:
Q  186 gaatttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    |||||||||||||| || ||||||||| |||||||||||| |||||||||| |||||||||||||    
T  50544439 gaatttgtttcagacagatgggtgtggctgccagaccctggtgagggttactcagttcgcggttc 50544375  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 19222260 - 19222299
Alignment:
Q  195 tcagataggtgggtgtggttgccagaccctgttgagggtt 234  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  19222260 tcagacaggtgggtgtggttgccagaccctgttgagggtt 19222299  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 33121245 - 33121313
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    |||||||| || |||||||||||||||||||||||| | | ||||||| | ||||| ||||||| ||||    
T  33121245 tttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcac 33121313  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 48192011 - 48191943
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    |||||||| || |||||||||||||| ||||||||| | | ||||||| | ||||| ||||||| ||||    
T  48192011 tttgtttccgacaggtgggtgtggtttccagaccctttggtgggttactctgttcgtggttcatatcac 48191943  T

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Target: scaffold0179 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 7738 - 7679
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  7738 tgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttc 7679  T

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Target: scaffold0179; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 12672 - 12613
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  12672 tgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttc 12613  T

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Target: scaffold0007 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 182341 - 182280
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  182341 tttgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgtggttc 182280  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 20395808 - 20395747
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  20395808 tttgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgtggttc 20395747  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 53780257 - 53780188
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 258  Q
    ||||||||||| |||||||||||||||||||| ||| || |||||||||| ||||||||||||| |||||    
T  53780257 tttgtttcagacaggtgggtgtggttgccagatcctattcagggttacactgttcgcggttcatatcact 53780188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 30273740 - 30273808
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||| | ||||| ||||||| ||||    
T  30273740 tttgtttcagacaggtgggtgtggttgccagacccttttgtgggttactctgttcgtggttcatatcac 30273808  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 10563237 - 10563298
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||| ||| |||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  10563237 tttgttttagacaggtgggtgtggttgccagatcctattcagggttacactgttcgcggttc 10563298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 42778448 - 42778387
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 252  Q
    |||||||||||||||||| ||||||||||| ||| ||| ||||||| | |||||||||||||    
T  42778448 tgtttcagataggtgggtttggttgccagatcctattgtgggttactctgttcgcggttcat 42778387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 53486881 - 53486949
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    ||||||||||| ||||| |||||||||||||||||| ||| ||||||| | ||||| ||||||| ||||    
T  53486881 tttgtttcagacaggtgagtgtggttgccagaccctattgtgggttactctgttcgtggttcatatcac 53486949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 34322247 - 34322315
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    |||||||| || |||||||||||||||||||||||| | | ||||||| | ||||| ||||||| ||||    
T  34322247 tttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcac 34322315  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 18106484 - 18106552
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    |||||||| || |||||||||||||||||||||||| | | ||||||| | ||||  ||||||| ||||    
T  18106484 tttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcttggttcatatcac 18106552  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 17873746 - 17873807
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||||||| |||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  17873746 tttgtttcagacaggtgggtgtggttgccagatcctattcagggttacactgttcgcggttc 17873807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 17079119 - 17079187
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||| || ||||| ||||||| ||||    
T  17079119 tttgtttcagacaagtgggtgtggttgccagaccttgttgagggttatactgttcgtggttcatatcac 17079187  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 11060789 - 11060848
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    |||||| || ||||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  11060789 tgtttctgacaggtgggtgtggttgcctgacccttttgagggttacactgttcgcggttc 11060848  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 18051381 - 18051438
Alignment:
Q  193 tttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||||| ||||||||||||||| | |||||||||||||||||||| ||||| |||||    
T  18051381 tttcagacaggtgggtgtggttgtctgaccctgttgagggttacactgttcgtggttc 18051438  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 9199182 - 9199243
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 252  Q
    ||||||||| |||||||| ||||||||||||| | ||| ||||||| | |||||||||||||    
T  9199182 tgtttcagacaggtgggtttggttgccagaccatattgtgggttactctgttcgcggttcat 9199243  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 4077487 - 4077426
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    ||||| ||||| |||||||||||||||| |||||||| |||||| || ||||||||||||||    
T  4077487 tttgtgtcagacaggtgggtgtggttgctagaccctgctgagggctatacagttcgcggttc 4077426  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 7458601 - 7458660
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttc 250  Q
    |||||| || |||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  7458601 tgtttccgacaggtgggtgtggttgccagatcctattcagggttacactgttcgcggttc 7458660  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 34231911 - 34231843
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    |||||||| || |||||||||||||||||||||||| | |  |||||| | ||||| ||||||| ||||    
T  34231911 tttgtttccgacaggtgggtgtggttgccagaccctttggtaggttactctgttcgtggttcatatcac 34231843  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 1380292 - 1380231
Alignment:
Q  191 tgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 252  Q
    |||||||||||||||||| ||||||||||| ||| ||| ||||||| | |||||||||||||    
T  1380292 tgtttcagataggtgggtttggttgccagatcctattgtgggttactctgttcgcggttcat 1380231  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 2999676 - 2999744
Alignment:
Q  189 tttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 257  Q
    |||||||| || |||||||||||||||||||||||| | | ||||||| | ||||  ||||||| ||||    
T  2999676 tttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcttggttcatatcac 2999744  T

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