View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1160_low_18 (Length: 216)
Name: NF1160_low_18
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1160_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 8362088 - 8362280
Alignment:
| Q |
22 |
ataaaaccaaatatattttagtagataagaaaatatagtatatggataatttatataatgtcgtaataatgtcactagactcataataatatcttacgtt |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8362088 |
ataaaaccaaatatatttt-gtagataagaaaatatagtatatggataatttatataatgtcttaataatgtcactagactcataataatatcttacgtt |
8362186 |
T |
|
| Q |
122 |
ttcactttagcttgttcnnnnnnnnnnnnnnnntatcttacgttttcattttcgtttatgaatccatgtggcattggaacttgagcatacatgt |
215 |
Q |
| |
|
|||| ||| | |||||| ||||||||||||||||||||||||||| ||||||||| |||||||| || | ||||||||| |
|
|
| T |
8362187 |
ttcattttggtttgttcaaaaaaaataaaaaaatatcttacgttttcattttcgtttatggatccatgtgacattggaatttcaacatacatgt |
8362280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 8371338 - 8371398
Alignment:
| Q |
155 |
tatcttacgttttcattttcgtttatgaatccatgtggcattggaacttgagcatacatgt |
215 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
8371338 |
tatcttacgttttcattttcgctcatggatccatgtggcattggaacttcagcatacatgt |
8371398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 8369938 - 8369998
Alignment:
| Q |
155 |
tatcttacgttttcattttcgtttatgaatccatgtggcattggaacttgagcatacatgt |
215 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| ||||||||||| | ||||||||| |
|
|
| T |
8369938 |
tatcttacgttttcattttcgtccatggatccatgtgacattggaacttcatcatacatgt |
8369998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 8371277 - 8371338
Alignment:
| Q |
28 |
ccaaatatattttagtagataagaaaatatagtatatggataatttatataatgtcgtaataat |
91 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
8371277 |
ccaaatatattttagtagataataaaatatagtata--aatcatttatataatgtcataataat |
8371338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University