View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1160_low_3 (Length: 459)
Name: NF1160_low_3
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1160_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 33517558 - 33517981
Alignment:
| Q |
7 |
tccaacaatatgaactaaatcatattgccatgtgatcaagcaggtgtcttgtcaaaaagcttcttcaagttatttaaaagaagtgaagaaatcccatttc |
106 |
Q |
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| T |
33517558 |
tccaataatatgaactaaatcatattgccatgtaatcaagcaggtgtcttgccaaaaagcttcttcaagttatttaaaagaagtgaagaaatcccatttc |
33517657 |
T |
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| Q |
107 |
gttagttctgataaggtatatccgaatattcccttcaatattttcaaagctgcatggggtaaagaaaaagtgaagacaaataatatggcaatcattataa |
206 |
Q |
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| T |
33517658 |
gttagttctgataaggtatatccgaatattcccttcaatattttcaaagctgcatggggtaaagaaaaagtgaagacaaataatatggcaatcattataa |
33517757 |
T |
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| Q |
207 |
tcacaaaaatattttatataatcgcaacatctagttaatcacgtgcaaaaatatggttggtcaaactcacatcgaaaaataatt-atatggttgaattaa |
305 |
Q |
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| T |
33517758 |
tcacaaaaatgttttagataatcgcaacatccggttaatcacgtgcaaaaatatggttggtcaaactcacgtcgaaaaataattcatatagtcgaattaa |
33517857 |
T |
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| Q |
306 |
ccatattttttatgacggattaaattaatcgaaaattttgtcgtt-aaatgaattaatcatatactcaattaaatttaccatggtttaaaacctgattta |
404 |
Q |
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|||||||||||| | ||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |
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| T |
33517858 |
ccatattttttacggcggattaaatttaccgaacattttgtcgttaaaatgaattaatcatatactcaattaaatttagcatggtttaaaatgtga-tta |
33517956 |
T |
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| Q |
405 |
atcaagtgtcatttgggtgtaaaaa |
429 |
Q |
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| T |
33517957 |
atcaagtgttattcgggtgtaaaaa |
33517981 |
T |
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