View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1160_low_8 (Length: 335)

Name: NF1160_low_8
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1160_low_8
NF1160_low_8
[»] chr8 (3 HSPs)
chr8 (248-310)||(39310195-39310257)
chr8 (154-212)||(39310292-39310350)
chr8 (70-108)||(39310373-39310411)
[»] chr7 (3 HSPs)
chr7 (248-310)||(43831503-43831565)
chr7 (154-212)||(43831595-43831653)
chr7 (70-108)||(43831663-43831701)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 39310257 - 39310195
Alignment:
Q  248 tgatgcaacaacaacaaaggaagaagaaacaatttcaatttcactaagttggttggatgagtg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39310257 tgatgcaacaacaacaaaggaagaagaaacaatttcaatttcactaagttggttggatgagtg 39310195  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 39310350 - 39310292
Alignment:
Q  154 tgtcactgatgcatttcatcccctccaccgttgtggcctccattcgcacctatcaacac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39310350 tgtcactgatgcatttcatcccctccaccgttgtggcctccattcgcacctatcaacac 39310292  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 39310411 - 39310373
Alignment:
Q  70 ctcaatgttgtttatcctctttttcatgttcatcatcat 108  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39310411 ctcaatgttgtttatcctctttttcatgttcatcatcat 39310373  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 43831565 - 43831503
Alignment:
Q  248 tgatgcaacaacaacaaaggaagaagaaacaatttcaatttcactaagttggttggatgagtg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43831565 tgatgcaacaacaacaaaggaagaagaaacaatttcaatttcactaagttggttggatgagtg 43831503  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 43831653 - 43831595
Alignment:
Q  154 tgtcactgatgcatttcatcccctccaccgttgtggcctccattcgcacctatcaacac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43831653 tgtcactgatgcatttcatcccctccaccgttgtggcctccattcgcacctatcaacac 43831595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 43831701 - 43831663
Alignment:
Q  70 ctcaatgttgtttatcctctttttcatgttcatcatcat 108  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43831701 ctcaatgttgtttatcctctttttcatgttcatcatcat 43831663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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