View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1160_low_9 (Length: 291)
Name: NF1160_low_9
Description: NF1160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1160_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 69 - 291
Target Start/End: Original strand, 12414601 - 12414823
Alignment:
| Q |
69 |
atctttgacccattttcctagacacgtataggtttttacttcttgtaaacctcccatgtattttgactattaagcaatataactattagtgataaaaatt |
168 |
Q |
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| T |
12414601 |
atctttgacccattttcctagacacatataggtttttacttcttgtaaacctcccatgtattttgactattaagcaatataactattagtgataaaaatt |
12414700 |
T |
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| Q |
169 |
aataaatccctattatccttgaaacttcaatgtttgttgtgcaaatttaagagtacctaacatttttatgtagtgcagaaatgacacgagggtaacttta |
268 |
Q |
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| T |
12414701 |
aataaatccctattatccttgaaacttcaatgtttgttgtgcaaatttaagagtagctaacatttttatgtagtgcagaaatgacacgagggtaacttta |
12414800 |
T |
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| Q |
269 |
ttgagtgcttcgatccatgaacc |
291 |
Q |
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| T |
12414801 |
ttgagtgcttcgatccatgaacc |
12414823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 12433180 - 12433251
Alignment:
| Q |
176 |
ccctattatccttgaaacttcaatgtttgttgtgcaaatttaagagtacctaacatttttatgtagtgcagaa |
248 |
Q |
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| T |
12433180 |
ccctattatcctataaacttcaatgcttgatgtgcaaatttaatagtaccgaac-tttttttgtagtacagaa |
12433251 |
T |
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