View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11610_high_1 (Length: 568)
Name: NF11610_high_1
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11610_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 7742327 - 7742874
Alignment:
| Q |
18 |
attatactgactagatgtttaccgtttaatttgtaggagtttttattgatggagagggaatactcaatctgcaaactggagcatacacaggaatgattga |
117 |
Q |
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| T |
7742327 |
attatactgactagatgtttaccatttaatttgtaggagtttttattgatggagagggaatactcaatctgcaaactggagcatacacaggaatgattga |
7742426 |
T |
|
| Q |
118 |
ttataacccactgggcaaacttaatccagtgcattatctagagctacacttttgaaagaatctaatgcttttataaaacgcttgcattttgttatttata |
217 |
Q |
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| T |
7742427 |
ttataacccactgggcaaacttaatccagtgcattatctagagctacacttttgaaagaatctaatgcttttataaaacgcttgcattttgttatttata |
7742526 |
T |
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| Q |
218 |
cagctattgttgtgctttcagtagaaaagagggaggatgaaagtgtcttttgaaattgtttgtaccttgttctttagaaaattttccttatttg--tata |
315 |
Q |
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| T |
7742527 |
cagctattgttgtgctttcagtagaaaagagggaggatgaaagtgtcttttgaaattgtttgtaccttgttctttagaaaattttccttatttgtatata |
7742626 |
T |
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| Q |
316 |
gtctctta--tttgaatcataattttatttgtttttctacatattgttaacgtgtccttgaattgttttctattcttgcatatatccatagaccattgac |
413 |
Q |
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| T |
7742627 |
gtctcttatttttgaatcataattttatttgtttttctacatattgttaacgtgtccttgaattgttttctattcttgcatatatccatagaccattgac |
7742726 |
T |
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| Q |
414 |
attaggaaaccctacaataattatattctaaaaacaattggagcttaattatgtttatgtaatttaatttttcaagaaatggctttgtttccacgattaa |
513 |
Q |
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| T |
7742727 |
attaggaaaccctacaataattatattctaaaaacaattggagcttaattatgtttatgtaatttagtttttcaagaaatggctttgtttccacgattaa |
7742826 |
T |
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| Q |
514 |
gtttttaaatggtaatttcaattgaagtctccaactagtttcatctca |
561 |
Q |
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| T |
7742827 |
gtttttaaatggtaatttcaattgaagtctccaactagtttcatctca |
7742874 |
T |
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