View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11610_high_12 (Length: 233)
Name: NF11610_high_12
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11610_high_12 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35036437 - 35036193
Alignment:
| Q |
1 |
catccaaatccaaccatctcaaaaaccgcaacatgtcagatataacaaatgaaccgctgagatcgaaaaagtccctaa------------tcctttgatt |
88 |
Q |
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| T |
35036437 |
catccaaatccaaccatctaaaaaaccgcaacatgtcagatataacaaatgaaccgctgagatcgaaaaagtccctaaaggattttctaatcctctgatt |
35036338 |
T |
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| Q |
89 |
ctcttcttcgtcaccatcaaaaactttccccgttaccgttctacacataacgttcatcgctatatcaccaaaccattttttcatttccgtaatagctctt |
188 |
Q |
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| T |
35036337 |
ctcttcttcgtcaccatcaaaaactttccccgttaccgttctacacataacgttcatcgctatatcaccaaaccattttttcatttccgtaatagctctt |
35036238 |
T |
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| Q |
189 |
tcagagttaccatcattcttcatctttagccaaaatgagtaacta |
233 |
Q |
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| T |
35036237 |
tcagagttaccatcattcttcatccttagccaaaatgagtaacta |
35036193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 35020238 - 35019995
Alignment:
| Q |
1 |
catccaaatccaaccatctcaaaaaccgcaacatgtcagatataacaaatgaaccgctgagatcgaaaaagtccctaatc------------ctttgatt |
88 |
Q |
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| T |
35020238 |
catccaaatccaaccatctcaaatacggtaacatgtcagaaacaacaaatgaaccactaagattaaaaaaatctctaatcatttttcttatcctttgatt |
35020139 |
T |
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| Q |
89 |
ctcttcttcgtcaccatcaaaaactttccccgttaccgttctacacataacgttcatcgctatatcaccaaaccattttttcatttccgtaatagctctt |
188 |
Q |
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| T |
35020138 |
ctcttcctcatcaccatcaaaacgttttcccattactgtcctaaaaacaacgttaatcgctatgtctgcaaaccattctttcatttccgtaaataccctt |
35020039 |
T |
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| Q |
189 |
tcagagttaccatcattcttcatctttagccaaaatgagtaact |
232 |
Q |
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| T |
35020038 |
tcagagttaccctcattcttcatctttaaccaaaatgaataact |
35019995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 35030244 - 35030123
Alignment:
| Q |
78 |
atcctttgattctcttcttcgtcaccatcaaaaactttccccgttaccgttctacacataacgttcatcgctatatcaccaaaccattttttcatttccg |
177 |
Q |
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| T |
35030244 |
atcctttgattctcttcctcatcaccatcaaaacgttttcccattactgtcctaaaaacaacgttaatcgctatgtctgcaaaccattctttcatttccg |
35030145 |
T |
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| Q |
178 |
taatagctctttcagagttacc |
199 |
Q |
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| T |
35030144 |
taaataccctttcagagttacc |
35030123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 35044434 - 35044382
Alignment:
| Q |
123 |
accgttctacacataacgttcatcgctatatcaccaaaccattttttcatttc |
175 |
Q |
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| T |
35044434 |
accgttctaaacatcacgtttatcgctatatcaccaaaccatttcttcatttc |
35044382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35044568 - 35044514
Alignment:
| Q |
1 |
catccaaatccaaccatctcaaaaaccgcaacatgtcagatataacaaatgaacc |
55 |
Q |
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| T |
35044568 |
catccaaatccaaccatcttaaaaacggcaacgaatcagatataacaaaggaacc |
35044514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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