View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11610_high_16 (Length: 213)

Name: NF11610_high_16

Description: NF11610

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11610_high_16

[»] chr5 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 154; E-Value: 7e-82

Query Start/End: Original strand, 17 - 195

Target Start/End: Original strand, 9002759 - 9002937

Alignment:

Q	17	cacagaaggtaaaaaggaagtttctacgatgaaattagtaatgaaagattggggccacatgagnnnnnnncattaacagtgagagctaagatataattaa	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9002759	cacagaaggtaaaaaggaagtttctacgatgaaattagtaatgaaagattggggccacatgagtttttttcattaacagtgagagctaagatataattaa	9002858	T

Q	117	atgtggtagataacaaaaagcaactaaaattataacaaatataaacagcaccataaatagattagttggatagctgaac	195	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9002859	atgtggtagataacaaaaagcaactaaaattataacaaatataaacaacaccataaatagattagttggatagctgaac	9002937	T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 138 - 184

Target Start/End: Original strand, 5130317 - 5130363

Alignment:

Q	138	aactaaaattataacaaatataaacagcaccataaatagattagttg	184	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	5130317	aactaaagttataacaaatataaacaacaccatcaatagattagttg	5130363	T

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