View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11610_high_3 (Length: 483)
Name: NF11610_high_3
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11610_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 5685259 - 5684813
Alignment:
| Q |
19 |
cagagaacacaaataaaatactattattaaatttcctaatacatcttgtataatatataatagcatatgctaaagagaaagaattgatattatgataaag |
118 |
Q |
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| T |
5685259 |
cagagaacacaaataaaatactattattaaatttcctaatacatcttgtataatatataatagcatatgctaaagagaaacaattgatattatgataaag |
5685160 |
T |
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| Q |
119 |
tgtgtcatgggaaatacctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacag |
218 |
Q |
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| T |
5685159 |
tgtgtcatgggaaatacctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacag |
5685060 |
T |
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| Q |
219 |
ttcttccaggcaaaagttgtgccattggattaggagaagaatgaatatattgaactaattttaaggtattctcataggtcactccagtagttggaatgaa |
318 |
Q |
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| T |
5685059 |
ttcttccaggcaaaagttgtgccattggattaggagaagaatgaatatattgaactaattttaaggtattctcataggtcactccagtagttggaatgaa |
5684960 |
T |
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| Q |
319 |
ataaggatcagaaggtacatcatttgcataaactttattgttaccaagtattaaaccaacaccaccagctctttgaacttccaaacnnnnnnncactctt |
418 |
Q |
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| T |
5684959 |
ataaggatcagaaggtacatcatttgcataaactttattgttaccaagtattaaaccaacaccaccagctctttgaacttccaaactttttttcactctt |
5684860 |
T |
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| Q |
419 |
ccaccttgccctctcatgcacaaaactatttttcccttgaccttgct |
465 |
Q |
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| T |
5684859 |
ccaccttgccctctcatgcacaaaactatttttcccttgaccttgct |
5684813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 134 - 465
Target Start/End: Complemental strand, 5697314 - 5696983
Alignment:
| Q |
134 |
acctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
233 |
Q |
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| T |
5697314 |
acctttagaatattagggtcaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
5697215 |
T |
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| Q |
234 |
gttgtgccattggattaggagaagaatgaatatattgaactaattttaaggtattctcataggtcactccagtagttggaatgaaataaggatcagaagg |
333 |
Q |
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| T |
5697214 |
gttgtgccattggattaggagaagaatgaatatattgaacaagttttaaggtattctcataggtcactccagtggcaggaatgaaataaggatcagaagg |
5697115 |
T |
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| Q |
334 |
tacatcatttgcataaactttattgttaccaagtattaaaccaacaccaccagctctttgaacttccaaacnnnnnnncactcttccaccttgccctctc |
433 |
Q |
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| T |
5697114 |
tacatcatttgcatgagttttattgttcccaaggataattccaacaccaccagctctttgaacttcaaaacttttgttcagtcttccaccttgtcctctc |
5697015 |
T |
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| Q |
434 |
atgcacaaaactatttttcccttgaccttgct |
465 |
Q |
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| T |
5697014 |
atgcacaaaactatcttccccttgaccttgct |
5696983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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