View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11610_high_5 (Length: 310)

Name: NF11610_high_5
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11610_high_5
NF11610_high_5
[»] chr3 (1 HSPs)
chr3 (1-294)||(50915039-50915332)
[»] chr1 (1 HSPs)
chr1 (10-294)||(45071600-45071884)
[»] chr7 (6 HSPs)
chr7 (16-294)||(6778522-6778794)
chr7 (16-294)||(6774235-6774507)
chr7 (16-294)||(37476124-37476396)
chr7 (16-292)||(37480648-37480918)
chr7 (77-285)||(37466338-37466546)
chr7 (83-257)||(37580881-37581050)
[»] chr8 (3 HSPs)
chr8 (70-294)||(37365001-37365226)
chr8 (100-294)||(37362827-37363021)
chr8 (5-47)||(37363017-37363059)
[»] chr5 (4 HSPs)
chr5 (152-294)||(8992506-8992648)
chr5 (152-294)||(8983108-8983250)
chr5 (153-192)||(35390402-35390441)
chr5 (152-192)||(36686793-36686833)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 50915039 - 50915332
Alignment:
Q  1 aaatattttggctatggtgattgaatactgtaagaagcatgttgatgccgccacaacaagttctgatggaaaaccttcagaagatgatcttgaggattgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  50915039 aaatattttggctatggtgattgaatactgtaagaagcatgtcgatgccgccgcagcaagttctgatggaaaaccttcagaagatgatcttgaggattgg 50915138  T
Q  101 gatgctgaatttgtgaaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaa 200  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50915139 gatgctgaatttgtgaaggttgataagggtacgcttttcaacctcattgatgctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaa 50915238  T
Q  201 ctgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcaggaagaggaagaagt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50915239 ctgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcaggaagaggaagaagt 50915332  T

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Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 45071884 - 45071600
Alignment:
Q  10 ggctatggtgattgaatactgtaagaagcatgttgatgccgccacaacaagttctgatggaaaaccttcagaagatgatcttgaggattgggatgctgaa 109  Q
    ||||||||||||||| ||||||||||||||||| |||||  |  |  | |||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  45071884 ggctatggtgattgattactgtaagaagcatgtcgatgctactgctgcgagttctgatgaaaaaccttcagaagatgatcttaagaattgggatgctgaa 45071785  T
Q  110 tttgtgaaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaactgtggcgg 209  Q
    || |||||||||||| ||| ||| ||||| |||||||||  |||||||||||| ||||| |||||| ||||| |||||||||| ||||| | ||||||||    
T  45071784 ttcgtgaaggttgatcaggctacgctttttgacctcattcttgctgcaaactacttggatatcaagggcttgctggatcttacctgccagattgtggcgg 45071685  T
Q  210 acatgatgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcaggaagaggaagaagt 294  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||| ||||||||    
T  45071684 acatgatcaaagggaagacaccggaggaaattcgaaagacttttaacatcaagaatgatttcactccgaaggaagaagaagaagt 45071600  T

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Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 6778522 - 6778794
Alignment:
Q  16 ggtgattgaatactgtaagaagcatgttgatgccgccacaacaagttctgatggaaaaccttcagaagatgatcttgaggattgggatgctgaatttgtg 115  Q
    |||||||||||||||||||||||||||||||||||| |      |||| |||| |||||||||||||||||||||| || |||||||||||||||| |||    
T  6778522 ggtgattgaatactgtaagaagcatgttgatgccgcga------gttccgatgaaaaaccttcagaagatgatcttaagaattgggatgctgaattcgtg 6778615  T
Q  116 aaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaactgtggcggacatga 215  Q
    ||||||||| ||| |||||||||||| ||||||  ||||||||| || ||| | ||||||||  |  |||||||||| |||||  |||||||||||||||    
T  6778616 aaggttgatcaggatacacttttcgatctcattcttgctgcaaattacttgaatatcaagagtctactggatcttacatgccagtctgtggcggacatga 6778715  T
Q  216 tgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcaggaagaggaagaagt 294  Q
    | ||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||||||| ||||||||||||||||    
T  6778716 tcaaagggaagacaccggaggaaattcgaaagacttttaatatcaagaatgatttcactccggaggaagaggaagaagt 6778794  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 6774235 - 6774507
Alignment:
Q  16 ggtgattgaatactgtaagaagcatgttgatgccgccacaacaagttctgatggaaaaccttcagaagatgatcttgaggattgggatgctgaatttgtg 115  Q
    ||||||||||||||||||||||||| | |||||||| |      |||| |||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  6774235 ggtgattgaatactgtaagaagcatatcgatgccgcga------gttccgatgaaaaaccttcagaagatgatcttaagaattgggatgctgaatttgtg 6774328  T
Q  116 aaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaactgtggcggacatga 215  Q
    |||||| || ||  ||| |||||||| ||||||  |||||||||  | ||| | ||||||||  | ||||||||||| |||||   ||||||||||||||    
T  6774329 aaggttcatcagactacgcttttcgatctcattcttgctgcaaatgacttgaatatcaagagtctattggatcttacctgccagtatgtggcggacatga 6774428  T
Q  216 tgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcaggaagaggaagaagt 294  Q
    | ||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||||||| ||||||||||||||||    
T  6774429 tcaaagggaagacaccggaggaaattcgaaagacttttaatatcaagaatgatttcactccggaggaagaggaagaagt 6774507  T

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Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 37476396 - 37476124
Alignment:
Q  16 ggtgattgaatactgtaagaagcatgttgatgccgccacaacaagttctgatggaaaaccttcagaagatgatcttgaggattgggatgctgaatttgtg 115  Q
    |||||| |||||||||||||||||||| |||||||  |      |||| |||| |||||| ||||||||||||||| || |||||||||||||||| ||     
T  37476396 ggtgatagaatactgtaagaagcatgtagatgccgaga------gttccgatgaaaaaccatcagaagatgatcttaagaattgggatgctgaattcgta 37476303  T
Q  116 aaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaactgtggcggacatga 215  Q
    ||||||||| ||| || ||||||||| ||||||  ||||||||| || ||| | ||||||||  |  |||||||||| ||||| ||||||||||||||||    
T  37476302 aaggttgatcaggataaacttttcgatctcattcttgctgcaaattacttgaatatcaagagtctactggatcttacctgccagactgtggcggacatga 37476203  T
Q  216 tgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcaggaagaggaagaagt 294  Q
    | |||||||||||||| |||||||||||||| |||||||| ||| |||| |||||||||||| ||||||||||||||||    
T  37476202 tcaaagggaagacaccagaggaaattcgaaagacttttaatatcaagaatgatttcactccggaggaagaggaagaagt 37476124  T

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Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 37480918 - 37480648
Alignment:
Q  16 ggtgattgaatactgtaagaagcatgttgatgccgccacaacaagttctgatggaaaaccttcagaagatgatcttgaggattgggatgctgaatttgtg 115  Q
    |||||| |||||||||||||||||||| |||||||  |      |||| |||| |||||| ||||||||||||||| || |||||||||||||||| ||     
T  37480918 ggtgatagaatactgtaagaagcatgtagatgccgaga------gttccgatgaaaaaccatcagaagatgatcttaagaattgggatgctgaattcgta 37480825  T
Q  116 aaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaactgtggcggacatga 215  Q
    ||||||||| ||| ||  |||||||  ||||||  ||||||||| || ||| | ||||||||  |  |||||||||| ||||| ||||||||||||||||    
T  37480824 aaggttgatcaggctaagcttttcggtctcattcttgctgcaaattacttgaatatcaagagtctactggatcttacctgccagactgtggcggacatga 37480725  T
Q  216 tgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcaggaagaggaagaa 292  Q
    | ||||||||||| ||||||||||||||||| |||||||| ||| |||| ||||||||| || ||||||||||||||    
T  37480724 tcaaagggaagacgccggaggaaattcgaaagacttttaatatcaagaatgatttcacttcggaggaagaggaagaa 37480648  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 37466546 - 37466338
Alignment:
Q  77 tcagaagatgatcttgaggattgggatgctgaatttgtgaaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaaga 176  Q
    ||||||||  ||||| || ||||||||||||| || || |||||||||||||  || ||||| || |||||   |||||||||||| ||||| |||||||    
T  37466546 tcagaagaatatcttaagaattgggatgctgatttcgttaaggttgataaggagacgctttttgaactcatccttgctgcaaactacttggatatcaaga 37466447  T
Q  177 gcttgttggatcttacttgccaaactgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactcc 276  Q
    |  |  |||||||||| |||||  ||| |||||||||||||||||||||||| || |||||||| ||  | |  ||||||||| |||| ||||||| |||    
T  37466446 gtctactggatcttacctgccagtctgcggcggacatgatgaaagggaagacgcccgaggaaatgcgtgagatgtttaacatcaagaatgatttcagtcc 37466347  T
Q  277 gcaggaaga 285  Q
      |||||||    
T  37466346 agaggaaga 37466338  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 37580881 - 37581050
Alignment:
Q  83 gatgatcttgaggattgggatgctgaatttgtgaag---gttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaagagct 179  Q
    ||||||||| ||| |||||| ||||||||  |||||   |||||| ||| ||  |||||||| |||||| | |||||||| || ||| | |||||||||     
T  37580881 gatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatcaagagcc 37580980  T
Q  180 tgttggatcttacttgccaaactgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacacttttaaca 257  Q
    ||||| | |||||        |||||||||||||||| || |||||||| |||||||| ||||| || || |||||||    
T  37580981 tgttgaagcttac--------ctgtggcggacatgatcaaggggaagacgccggaggagattcgcaagacgtttaaca 37581050  T

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Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 70 - 294
Target Start/End: Original strand, 37365001 - 37365226
Alignment:
Q  70 aaaaccttcagaagatgatcttgaggattgggatgctgaatttgtgaaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaa 169  Q
    |||||||||||||||||||||  || ||||||||| ||| || |||||||||||| ||||||| |||||||| ||||||  |||||||||||| |||||     
T  37365001 aaaaccttcagaagatgatctcaagaattgggatggtgatttcgtgaaggttgatcagggtacgcttttcgatctcattcttgctgcaaactacttggat 37365100  T
Q  170 atcaagagc-ttgttggatcttacttgccaaactgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgat 268  Q
    ||||||||| ||| |||||||||| ||| | ||||||||| ||||||| |||||||||||||||||| |||||||| | |||||| ||||| |||| |||    
T  37365101 atcaagagcgttgctggatcttacctgcgagactgtggcgaacatgattaaagggaagacaccggagcaaattcgagagacttttcacatcaagaatgat 37365200  T
Q  269 ttcactccgcaggaagaggaagaagt 294  Q
    ||||||||| ||||| ||||||||||    
T  37365201 ttcactccggaggaaaaggaagaagt 37365226  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 294
Target Start/End: Complemental strand, 37363021 - 37362827
Alignment:
Q  100 ggatgctgaatttgtgaaggttgataagggtacacttttcgacctcattgatgctgcaaactatttggaaatcaagagcttgttggatcttacttgccaa 199  Q
    ||||| ||| || |||||||||||| ||||||| |||||||| ||||||  |||| ||||||| ||||| |||||||||||| |||||||||| ||| |     
T  37363021 ggatggtgatttcgtgaaggttgatcagggtacgcttttcgatctcattcttgcttcaaactacttggatatcaagagcttgctggatcttacctgcgag 37362922  T
Q  200 actgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcaggaagaggaagaagt 294  Q
    ||||||| | ||||||| |||||||||||||||||| |||||||| | |||||| ||||| |||| |||||||||||| ||||||||||||||||    
T  37362921 actgtggtgaacatgattaaagggaagacaccggagcaaattcgagagacttttcacatcaagaatgatttcactccggaggaagaggaagaagt 37362827  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 37363059 - 37363017
Alignment:
Q  5 attttggctatggtgattgaatactgtaagaagcatgttgatg 47  Q
    |||||||| | ||||||||||||||||||||||||||| ||||    
T  37363059 attttggcgaaggtgattgaatactgtaagaagcatgtggatg 37363017  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 8992506 - 8992648
Alignment:
Q  152 gctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaactgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacactt 251  Q
    ||||| || |||||| | ||||||| | || |||||||||| ||||| |||||||| |||||||| || ||||||||||| ||||| ||||| || || |    
T  8992506 gctgctaattatttgaatatcaagaacctgctggatcttacatgccagactgtggcagacatgatcaaggggaagacacctgaggagattcgcaagacct 8992605  T
Q  252 ttaacatcgagaacgatttcactccgcaggaagaggaagaagt 294  Q
    |||||||  |||| |||||| | ||  |||||||||| |||||    
T  8992606 ttaacattaagaatgatttctcaccagaggaagaggaggaagt 8992648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 8983108 - 8983250
Alignment:
Q  152 gctgcaaactatttggaaatcaagagcttgttggatcttacttgccaaactgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacactt 251  Q
    ||||| ||||| ||| | |||||||||||| |||||||||| ||||||||||| || |||||||| || || || ||||| ||||| || || || || |    
T  8983108 gctgctaactacttgaatatcaagagcttgctggatcttacctgccaaactgttgcagacatgatcaagggaaaaacaccagaggagatccgcaagacat 8983207  T
Q  252 ttaacatcgagaacgatttcactccgcaggaagaggaagaagt 294  Q
    | |||||| |||| || ||| | ||  |||||||||| |||||    
T  8983208 tcaacatcaagaatgacttctcacctgaggaagaggaggaagt 8983250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 35390441 - 35390402
Alignment:
Q  153 ctgcaaactatttggaaatcaagagcttgttggatcttac 192  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  35390441 ctgcaaactatttgaacatcaagagcttgttggatcttac 35390402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 36686833 - 36686793
Alignment:
Q  152 gctgcaaactatttggaaatcaagagcttgttggatcttac 192  Q
    ||||||||||||||| | ||||||| |||||||||||||||    
T  36686833 gctgcaaactatttgaacatcaagaacttgttggatcttac 36686793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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