View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11610_high_7 (Length: 273)
Name: NF11610_high_7
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11610_high_7 |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 2216135 - 2215887
Alignment:
| Q |
15 |
aatatgtatactcttaatgtcttactatgaactaatatcttcccttatgaacagacaagcagtgtaattggagatcaaggattaagagttcttggtgact |
114 |
Q |
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| T |
2216135 |
aatatgtatactcttagtgtcttactatgaactaatatcttcccttatgaacagacaagcagtgtaattggagatcaaggattaagagttcttggtgact |
2216036 |
T |
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| Q |
115 |
gctgtattattcatagcttatcggtgtgtgatacaaatccataattataaccaaaatgaaatgttattatatctgaaaataagtatcaattcttgtcaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2216035 |
gctgtattattcatagcttatcggtgtgtgatacaaatccataattataaccaaaatgaaatgttattatatctgaaaatgagtatcaattcttgtcaag |
2215936 |
T |
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| Q |
215 |
gagcttagaaaaacgattcaaaccctcttgttatatgaatgtgtctctg |
263 |
Q |
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| T |
2215935 |
gagcttagaaaaacgattcaaaccctcttgttatatgaatgtgactctg |
2215887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 2217721 - 2217639
Alignment:
| Q |
15 |
aatatgtatactcttaatgtcttactatgaactaatatcttcccttatgaacagacaagcagtgtaattggagatcaaggatt |
97 |
Q |
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| T |
2217721 |
aatatgtatactcttagtatcttactatgaactaatatcttcccttttgaacagataagtagtataattggagatcaatgatt |
2217639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 4592 - 4344
Alignment:
| Q |
15 |
aatatgtatactcttaatgtcttactatgaactaatatcttcccttatgaacagacaagcagtgtaattggagatcaaggattaagagttcttggtgact |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4592 |
aatatgtatactcttagtgtcttactatgaactaatatcttcccttatgaacagacaagcagtgtaattggagatcaaggattaagagttcttggtgact |
4493 |
T |
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| Q |
115 |
gctgtattattcatagcttatcggtgtgtgatacaaatccataattataaccaaaatgaaatgttattatatctgaaaataagtatcaattcttgtcaag |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4492 |
gctgtattattcatagctnatcggtgtgtgatacaaatccataattataaccaaaatgaaatgttattatatctgaaaatgagtatcaattcttgtcaag |
4393 |
T |
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| Q |
215 |
gagcttagaaaaacgattcaaaccctcttgttatatgaatgtgtctctg |
263 |
Q |
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| T |
4392 |
gagcttagaaaaacgattcaaaccctcttgttatatgaatgtgactctg |
4344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 6177 - 6095
Alignment:
| Q |
15 |
aatatgtatactcttaatgtcttactatgaactaatatcttcccttatgaacagacaagcagtgtaattggagatcaaggatt |
97 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||| ||| |||||||||||||| |||| |
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| T |
6177 |
aatatgtatactcttagtatcttactatgaactaatatcttcccttttgaacagataagtagtataattggagatcaatgatt |
6095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 31407748 - 31407649
Alignment:
| Q |
21 |
tatactcttaatgtcttactatgaactaatatcttcccttatgaacagacaagcagtgtaattggagatcaaggattaagagttcttggtgactgctgta |
120 |
Q |
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| T |
31407748 |
tatactcttagtctcttactatgaactgatatcttcccttatgaacagacgagaaatgtaattggagatagaggattagtgattcttggtcactgctgta |
31407649 |
T |
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