View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11610_high_8 (Length: 264)

Name: NF11610_high_8
Description: NF11610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11610_high_8
NF11610_high_8
[»] chr4 (4 HSPs)
chr4 (1-264)||(35036427-35036690)
chr4 (57-264)||(35020228-35020429)
chr4 (178-264)||(35044558-35044644)
chr4 (57-122)||(35044697-35044762)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 35036690 - 35036427
Alignment:
Q  1 aacaagtggaagtggattcaattacttgctttatgtttttgggtgggagtaaactaacataccagacaagtggctttgattgtggtgtcagcatcacgac 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35036690 aacaagtggaagtggattcaattactcgctttatgtttttgggtgggagtaaactaacataccagacaagttgctttgattgtggtgtcagcatcacgac 35036591  T
Q  101 catctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttggtgccggcaggtttcttgttgcgtttgtgttgatcgagccaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036590 catctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttggtgccggcaggtttcttgttgcgtttgtgttgatcgagccaaac 35036491  T
Q  201 ttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatcc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036490 ttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatcc 35036427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 264
Target Start/End: Complemental strand, 35020429 - 35020228
Alignment:
Q  57 acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttg 156  Q
    |||||||| |||||||||||||||||| || ||||||||||| ||||||| ||||   ||||||||||||||||| |||||||||||||| ||    |||    
T  35020429 acataccatacaagtggctttgattgtagtatcagcatcacggccatctaaatct---tcatcaacggttgaaagcagcacatccatgaaatc----ttg 35020337  T
Q  157 gtgccg-gcaggtttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttcca 255  Q
     |  ||  |||  ||||| ||  ||||||| ||||| ||||||||   |||||| |||||||||||||| || ||||||||||| |||||||||||||||    
T  35020336 ttcacgaccagaattcttcttatgtttgtgctgatcaagccaaacacaaacaaagtcatctaactcttttgctgttttcttcatttgcttctgttttcca 35020237  T
Q  256 tccaaatcc 264  Q
    |||||||||    
T  35020236 tccaaatcc 35020228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 35044644 - 35044558
Alignment:
Q  178 cgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatcc 264  Q
    |||||||||||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||| | ||||| ||||||||||||||||    
T  35044644 cgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatcc 35044558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 35044762 - 35044697
Alignment:
Q  57 acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaac 122  Q
    |||||||||||| || | |||||| || ||  |||||||||||||||| || ||||||||||||||    
T  35044762 acataccagacacgtagttttgatagtagttccagcatcacgaccatcaatttcttgatcatcaac 35044697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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